Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30563
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30600.2 68415.m03729 BTB/POZ domain-containing protein conta...    32   0.26 
At2g30600.1 68415.m03728 BTB/POZ domain-containing protein conta...    32   0.26 
At2g04300.1 68415.m00422 leucine-rich repeat protein kinase, put...    29   1.4  
At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family...    29   2.5  
At3g07420.1 68416.m00884 asparaginyl-tRNA synthetase 2, cytoplas...    29   2.5  
At5g50400.1 68418.m06242 calcineurin-like phosphoesterase family...    28   4.3  
At4g38770.1 68417.m05490 proline-rich family protein (PRP4) simi...    28   4.3  
At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative (CH...    27   5.7  
At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase / lon...    27   5.7  
At3g49590.2 68416.m05420 expressed protein                             27   7.5  
At3g49590.1 68416.m05419 expressed protein                             27   7.5  
At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) near...    27   9.9  
At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) near...    27   9.9  

>At2g30600.2 68415.m03729 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 14/139 (10%)
 Frame = +3

Query: 57  DVATDDNLQYQFFPVSSGSVQFKVRAANDAHIAL--TTGPQ------ESDPMYEVMIGGW 212
           + A  D+L+++      G V F   A ND  +      G Q      ++ P Y V+IG  
Sbjct: 16  ECAWSDDLKFR--EAGRGCVAFDAFAHNDVTVVFRENVGTQHYHYKKDNSPHYIVIIGSN 73

Query: 213 GNAKSVIRKNRTKPDKVEIESPGILNGG-EYRGFWVRWDSGIISAGREGEAIPF----IS 377
            N +  I+ +      V+ E+  +     E++ +W+    G+IS G+     PF      
Sbjct: 74  RNRRLKIQVDGKSV--VDEEASDLCRCSLEFQSYWISIYDGLISIGK--GRYPFQNLVFK 129

Query: 378 WSDPEP-FPVYYVGVCTGW 431
           W DP+P   V YVG+ + W
Sbjct: 130 WQDPKPNCNVQYVGL-SSW 147


>At2g30600.1 68415.m03728 BTB/POZ domain-containing protein contains
           Pfam PF00651: BTB/POZ domain; contains Interpro
           IPR000210/ PS50097: BTBB/POZ domain; similar to MigA
           (GI:1841872) [Dictyostelium discoideum]
          Length = 809

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 14/139 (10%)
 Frame = +3

Query: 57  DVATDDNLQYQFFPVSSGSVQFKVRAANDAHIAL--TTGPQ------ESDPMYEVMIGGW 212
           + A  D+L+++      G V F   A ND  +      G Q      ++ P Y V+IG  
Sbjct: 16  ECAWSDDLKFR--EAGRGCVAFDAFAHNDVTVVFRENVGTQHYHYKKDNSPHYIVIIGSN 73

Query: 213 GNAKSVIRKNRTKPDKVEIESPGILNGG-EYRGFWVRWDSGIISAGREGEAIPF----IS 377
            N +  I+ +      V+ E+  +     E++ +W+    G+IS G+     PF      
Sbjct: 74  RNRRLKIQVDGKSV--VDEEASDLCRCSLEFQSYWISIYDGLISIGK--GRYPFQNLVFK 129

Query: 378 WSDPEP-FPVYYVGVCTGW 431
           W DP+P   V YVG+ + W
Sbjct: 130 WQDPKPNCNVQYVGL-SSW 147


>At2g04300.1 68415.m00422 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 851

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 180 DPMYEVMIGGWGNAKSVIRKNRTKPDKVEIESPGILNGGEYRGFWVRWDSGIISAG 347
           D  ++  +  +G ++S   +  T+ D V   +PG L+   YR  W+   S + S G
Sbjct: 675 DEHFQAKLADFGLSRSFPLEGETRVDTVVAGTPGYLDPEYYRTNWLNEKSDVYSFG 730


>At3g52460.1 68416.m05769 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 300

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 400 GKGSGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPG 275
           G G  S++D+N    P  P +  P   +TQ+  Y P +  PG
Sbjct: 16  GPGQNSERDIN--QPPPPPPQSQPPPPQTQQQTYPPVMGYPG 55


>At3g07420.1 68416.m00884 asparaginyl-tRNA synthetase 2, cytoplasmic
           / asparagine-tRNA ligase 2 (SYNC2) nearly identical to
           SP|Q9SW95; HMM hit: tRNA synthetases class II
          Length = 638

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 195 VMIGGWGNAKSVIRKNRTKPDKVEIESPGILNGGE 299
           V+IGGW  +   ++KN   P    + +P   +GG+
Sbjct: 50  VVIGGWVKSARAVKKNSPPPPLPVVAAPSPSSGGD 84


>At5g50400.1 68418.m06242 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 611

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
 Frame = +3

Query: 171 QESDPMYEVMIGGWGNAKSVIRKNRTK--PDKVEIESPGILNGGEYRGFWVRWDSGIISA 344
           Q +D  + +  GG  N   V   N       K  +  P +  G ++    V W SG    
Sbjct: 135 QRADFSFALFTGGLSNPTLVSVSNHVSFINPKAPVY-PRLALGKKWDEMTVTWTSGY--- 190

Query: 345 GREGEAIPFISWS 383
              GEA+PF+ WS
Sbjct: 191 -NIGEAVPFVEWS 202


>At4g38770.1 68417.m05490 proline-rich family protein (PRP4) similar
           to proline-rich protein [Arabidopsis thaliana]
           gi|6782442|gb|AAF28388; contains proline-rich extensin
           domains, INTERPRO:IPR002965
          Length = 448

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 346 PAEIMPLSQRTQKPRYSPPLRIP 278
           P E+ P  ++   P+YSPP+ +P
Sbjct: 171 PLELPPFLKKPCPPKYSPPVEVP 193


>At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative
           (CHX15) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 821

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -3

Query: 301 YSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIGSDSCGPVVSAMWASFA 134
           +S PL +  L ++ +  +  FF+  L  F QP +I+  +G    GP V      FA
Sbjct: 35  FSLPLFV--LQLTLVVVVTRFFVFILKPFRQPRVISEILGGIVLGPSVLGRSTKFA 88


>At1g49430.1 68414.m05541 long-chain-fatty-acid--CoA ligase /
           long-chain acyl-CoA synthetase nearly identical to acyl
           CoA synthetase (MF45P) GI:1617268 from [Brassica napus]
          Length = 665

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 374 YEWNSFTLASSGDNAAIPTNPKTTIFPSVKNSG 276
           + WN F+L  + D A +P   KT I   +  SG
Sbjct: 201 FSWNEFSLMGNLDEANLPRKRKTDICTIMYTSG 233


>At3g49590.2 68416.m05420 expressed protein 
          Length = 603

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -3

Query: 331 PLSQRTQKPRYSPPLRIPG---LSISTLSGLVLFFLMTLLAFPQPPIITSYIGSDSCGPV 161
           P+++  ++ R++P    PG    S++  S L  F L   +  P P IIT Y+GS +  P+
Sbjct: 196 PVTETMKEFRFAPVEVPPGRLCASVTYRSDLSDFNLGAHITLP-PRIITDYVGSPATDPM 254


>At3g49590.1 68416.m05419 expressed protein 
          Length = 603

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -3

Query: 331 PLSQRTQKPRYSPPLRIPG---LSISTLSGLVLFFLMTLLAFPQPPIITSYIGSDSCGPV 161
           P+++  ++ R++P    PG    S++  S L  F L   +  P P IIT Y+GS +  P+
Sbjct: 196 PVTETMKEFRFAPVEVPPGRLCASVTYRSDLSDFNLGAHITLP-PRIITDYVGSPATDPM 254


>At1g12370.2 68414.m01430 type II CPD photolyase PHR1 (PHR1) nearly
           identical to type II CPD photolyase PHR1 [Arabidopsis
           thaliana] GI:2984707; similar to class II DNA photolyase
           (GI:5081541) [Chlamydomonas reinhardtii]; supporting
           cDNA gi|2984706|gb|AF053365.1|AF053365
          Length = 496

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 315 VRWDSGIISAGREGEAIPFISWSDP 389
           V WDS I    REG  +P I W  P
Sbjct: 208 VDWDSLIDKVVREGAEVPEIEWCVP 232


>At1g12370.1 68414.m01429 type II CPD photolyase PHR1 (PHR1) nearly
           identical to type II CPD photolyase PHR1 [Arabidopsis
           thaliana] GI:2984707; similar to class II DNA photolyase
           (GI:5081541) [Chlamydomonas reinhardtii]; supporting
           cDNA gi|2984706|gb|AF053365.1|AF053365
          Length = 490

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 315 VRWDSGIISAGREGEAIPFISWSDP 389
           V WDS I    REG  +P I W  P
Sbjct: 208 VDWDSLIDKVVREGAEVPEIEWCVP 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,698,112
Number of Sequences: 28952
Number of extensions: 268873
Number of successful extensions: 857
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)