Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30562
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical ...   102   2e-22
Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical pr...    31   0.65 

>AL032626-9|CAA21529.1|  180|Caenorhabditis elegans Hypothetical
           protein Y37D8A.10 protein.
          Length = 180

 Score =  102 bits (244), Expect = 2e-22
 Identities = 51/129 (39%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
 Frame = +3

Query: 81  TAEAAKI-NKWDGAAAKNAVDDAIREVMTGDLKCKESFALIDGRLFXXXXXXXXXXXXXX 257
           T E  K+ NKWDG   KNA+D+ +++++   +   ES  L++ RL               
Sbjct: 2   TDEPVKVVNKWDGPTVKNALDEVVKKILNDKVGWTESHNLMNLRLLISFIGVAFSAFACG 61

Query: 258 WDYLYPFPQSRLVLIICVSSYFILMGILTLYTTFKEKGIFVVAXEKVGNNTRVWEASSYV 437
           +DY  PFP+S++VL +C  SYFI MGIL +Y  + EK     A E  G  +R W  SS +
Sbjct: 62  YDYYEPFPKSKIVLAVCSVSYFICMGILQMYQWYVEKDCIYEATEVDGKQSRKWAWSSEI 121

Query: 438 KKHDDKYNL 464
           K HDDKY L
Sbjct: 122 KAHDDKYTL 130


>Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical
           protein T20B3.1 protein.
          Length = 608

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 501 HECCHSCLA*QLRDCIYRRVSLHKNWLPRPW 409
           HE  HS L  QL+  +  R   HKNWL   W
Sbjct: 46  HEFQHSELGAQLQSALENRAKNHKNWLEDWW 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,323,465
Number of Sequences: 27780
Number of extensions: 219032
Number of successful extensions: 562
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)