Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30561
(509 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 322 2e-89
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 192 3e-50
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 173 2e-44
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 126 2e-30
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 77 2e-15
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 76 3e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 66 4e-12
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 65 7e-12
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 54 9e-09
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 37 0.002
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.18
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 2.2
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 2.9
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 25 6.6
SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe... 25 8.7
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 8.7
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 322 bits (791), Expect = 2e-89
Identities = 151/165 (91%), Positives = 160/165 (96%)
Frame = +1
Query: 13 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 192
KIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETFN+PA YVAIQAVLSLY
Sbjct: 84 KIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLY 143
Query: 193 ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 372
ASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TT
Sbjct: 144 ASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTT 203
Query: 373 AEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVI 507
AEREIVRDIKEKLCYVALDFEQE+ TAA S+SLEKSYELPDGQVI
Sbjct: 204 AEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVI 248
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 192 bits (467), Expect = 3e-50
Identities = 86/165 (52%), Positives = 120/165 (72%)
Frame = +1
Query: 13 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 192
++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE + +YVAIQAVLSLY
Sbjct: 84 QLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLY 143
Query: 193 ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT 372
A G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F T
Sbjct: 144 AQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRT 203
Query: 373 AEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVI 507
A+ E VR++KEKLCYV+ D E + + +T L ++Y LPDG+VI
Sbjct: 204 ADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVI 248
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 173 bits (420), Expect = 2e-44
Identities = 80/166 (48%), Positives = 116/166 (69%), Gaps = 1/166 (0%)
Frame = +1
Query: 13 KIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSL 189
+IW + + ++ L PEEHP+LLTE PL N+EK+ + +ET N PA+ ++Q VL+L
Sbjct: 88 EIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLAL 147
Query: 190 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTT 369
YAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ +
Sbjct: 148 YASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVS 207
Query: 370 TAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVI 507
+AE+EIVR+IKEK CYVA DF E+ + +Y+LPD Q I
Sbjct: 208 SAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTI 253
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 126 bits (304), Expect = 2e-30
Identities = 68/155 (43%), Positives = 94/155 (60%), Gaps = 10/155 (6%)
Frame = +1
Query: 13 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 192
+ W + + LR PE+H LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L
Sbjct: 107 RFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALA 166
Query: 193 ASGRT--------TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 348
AS + TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +
Sbjct: 167 ASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRD 226
Query: 349 RGY--SFTTTAEREIVRDIKEKLCYVALDFEQEMA 447
R S TAER IKE+ CYV D +E +
Sbjct: 227 RNEPDSSLKTAER-----IKEECCYVCPDIVKEFS 256
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 76.6 bits (180), Expect = 2e-15
Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 2/157 (1%)
Frame = +1
Query: 13 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLY 192
++ +TF +L + EHP+ +TE NP R MT+++FE +N+P++ I + S Y
Sbjct: 100 QVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFY 158
Query: 193 ASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 366
+ + ++GIVL+ G+ SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 159 HNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFP 218
Query: 367 TTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEK 477
+ C+V+ D+ ++A A LE+
Sbjct: 219 IKMLPSQAELLMHDHCHVSSDYTHDIAHALDRDILER 255
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 76.2 bits (179), Expect = 3e-15
Identities = 37/114 (32%), Positives = 59/114 (51%)
Frame = +1
Query: 16 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYA 195
+W + +L+ P EHP+L+TE NP NR K + MFE+ PA Y+A Q + +A
Sbjct: 83 LWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFA 142
Query: 196 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 357
SG+ T ++D G S IY+G+ L +G + D L + L ++ +
Sbjct: 143 SGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNF 196
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 65.7 bits (153), Expect = 4e-12
Identities = 30/115 (26%), Positives = 59/115 (51%)
Frame = +1
Query: 19 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYAS 198
W +L+V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+
Sbjct: 87 WERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFAN 146
Query: 199 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 363
++T +++D G + P+ +G + I + LAG L + ++ F
Sbjct: 147 SKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSLAGDFLNANIEQLFNTMNIEF 201
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 64.9 bits (151), Expect = 7e-12
Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Frame = +1
Query: 214 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 393
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 394 DIKEKLCYVALDFEQEMATA--AASTSLEKSYELPD 495
+IKE +CYV+ +F+++M + LE Y LPD
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPD 252
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 54.4 bits (125), Expect = 9e-09
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Frame = +1
Query: 19 WHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLS 186
W H Y+ L P + +PV L +RE TQ FE P +A + ++
Sbjct: 129 WKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFEECQVPGFTIAYEPLMG 187
Query: 187 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 366
LYA G G+V+D G + PI +G + A +L L GR +T +L +L E +
Sbjct: 188 LYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRESLPTLK 247
Query: 367 TTAEREIVRDIKE 405
++ + DI E
Sbjct: 248 SSGQYVSKEDITE 260
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 36.7 bits (81), Expect = 0.002
Identities = 19/101 (18%), Positives = 48/101 (47%)
Frame = +1
Query: 61 EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 240
++ V+ L + EK+ I+F + + +++ + + +G + V+D G
Sbjct: 243 QYSVIFIVPDLYDRVYVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQK 302
Query: 241 SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 363
+ + EG +P++ ++++ G D+T MK+L + +
Sbjct: 303 TSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 30.3 bits (65), Expect = 0.18
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 31 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNSPAM---YVAIQ 174
+Y L E+HP+LLT+ A L P+ + ++ +I ++ N+P + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 257 STKVTLCPTPSSVWTW 304
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 2.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 73 LLTEAPLNPKANREKMTQIMFETFN 147
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 25.0 bits (52), Expect = 6.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 258 LRRLRSAPRHPPSGLGWSRLDRLPHED 338
L++ + +H G WS LDR H+D
Sbjct: 254 LKKSKRVKKHDYGGEDWSLLDRKFHDD 280
>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 24.6 bits (51), Expect = 8.7
Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Frame = +2
Query: 242 PTPYPSTKVTLC-PTP 286
P P P TKV +C PTP
Sbjct: 256 PAPSPETKVLICGPTP 271
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 8.7
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +1
Query: 226 SGDGVSHTVPIYEGYALP 279
+G G+ H + + +GYA+P
Sbjct: 157 AGRGIGHQIMVEQGYAMP 174
>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 24.6 bits (51), Expect = 8.7
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 397 IKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQV 504
IKEKL VA EQE A +SL+ S + G V
Sbjct: 111 IKEKLRRVANITEQEQQCIPAESSLDLSIQAMKGVV 146
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,629,700
Number of Sequences: 5004
Number of extensions: 29500
Number of successful extensions: 123
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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