Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30560
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 27 1.7
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 2.9
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 26 2.9
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 25 5.1
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 25 5.1
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 25 5.1
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 6.7
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.9
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 8.9
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 8.9
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 61 LEIWRIENFEPVAVPKTQFGLFYSGDS 141
L IW I+NFE + P + LF+S S
Sbjct: 561 LYIWNIKNFEAIHSPVSTLPLFHSNFS 587
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 215 PARTKPARRPSSR*TWTTNNSRDQRYSTERSNITSPRSS*NIS 343
PA ++ ++PSS+ T SR+Q S S + S + N+S
Sbjct: 1251 PAISESRKKPSSKDTKIETPSREQSRSQTASPVKSEKDDGNVS 1293
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 512 KMKQSPLFKDSNVGFTCLTRTFLLPLIWKSRFSVPSLIVT 393
K K+ +F F + +LPL+++ + ++PSL VT
Sbjct: 476 KRKRKIIFIGFGEEFLTFSENLVLPLLFQIKIALPSLAVT 515
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 143 TLY*TPQAIRTV*HGTSISGSARGPARTKPARRPSSR 253
T+Y P A+ T +GT+I + P P SR
Sbjct: 187 TIYGIPDALHTTQNGTTIHVTGTPPGAVSQRSEPDSR 223
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 289 VQHREVQYYESKEFLEYFSPAIRYLKGGHASG 384
+QH E++ Y K LEY K G ++G
Sbjct: 865 IQHEEMKAYRRKNDLEYIDQHFASSKSGISNG 896
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 5.1
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +2
Query: 188 TSISGSARGPAR--TKPARRPSSR*TWTTNNSRDQRYSTERSNITSPRSS*NISHQPSAI 361
TS SGS+ A + A +PS++ + + NS + SN+ S SS +P+A
Sbjct: 215 TSTSGSSSNVAAEVSNDASQPSNQDS--SLNSNIVKPPLPPSNVQSNSSSSENVPKPNAE 272
Query: 362 *KADTPQASAT*RSMREQRNDS 427
+ D P A S+ E NDS
Sbjct: 273 TQEDLPTIDAHESSLYENVNDS 294
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 126 EETELSLRNGDRFEVLNPPYFE 61
EE +L L++ +RF+V P +FE
Sbjct: 457 EEMDLDLKSDERFKVDIPTFFE 478
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 301 EVQYYESKEFLEYFSPAIRY 360
E+ YY + L++F P IRY
Sbjct: 478 EIAYYFTDVLLKWFQPIIRY 497
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 8.9
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Frame = +2
Query: 113 SSVSSTPGTPTLY*TPQAIRTV*HGTSISGSARGPARTKPARRPSSR*TWTTNNSRDQRY 292
SSVSST + + + T S S S+ + + + SS + ++++S
Sbjct: 130 SSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 189
Query: 293 STERSNITSPRSS*NISHQP--SAI*KADTPQASAT*RSMREQRNDSSRSRVKETSA 457
S+ S+ +S SS + S P S+ + + +S++ S R SS S + S+
Sbjct: 190 SSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSS 246
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -1
Query: 168 IACGVQYNVGVPGVEETELSLRNGDRFEVLNPPYFETRLPAGIRECL 28
+A GV++ VG E + +NGD ++ L T LPAG C+
Sbjct: 397 VADGVEFYVGAASSEVEAAAQKNGD-WQTLIDSGART-LPAGCGPCI 441
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,983
Number of Sequences: 5004
Number of extensions: 44830
Number of successful extensions: 146
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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