Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30557
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...   170   9e-44
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    50   3e-07
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    30   0.18 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   1.7  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   2.9  
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    26   3.8  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   6.7  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    25   8.9  

>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score =  170 bits (414), Expect = 9e-44
 Identities = 80/152 (52%), Positives = 109/152 (71%)
 Frame = +2

Query: 59  EQTVPPTIPVAELFPDGNFPEGQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQE 238
           EQT PPT+ ++++F +  +P G++ D+  AE    RT     T EEKRALDR + D Y +
Sbjct: 64  EQTNPPTVGLSKIFVNKKYPVGEVCDY--AEDNLWRT-----TDEEKRALDRQNFDQYND 116

Query: 239 IRHAAEAHRQTRKHIRNWIKPGMTMIDICEELEKTARRLIGEDGLKAGLAFPTGCSRNHC 418
           +R AAE HRQ R++ ++ IKPGM+M+D+   +E T R L+ EDGLK+G+ FPTG S NHC
Sbjct: 117 LRRAAEVHRQARQYAQSVIKPGMSMMDVVNTIENTTRALVEEDGLKSGIGFPTGVSLNHC 176

Query: 419 AAHYTPNTGDTTVLEYDDVVKIDFGTHINGRI 514
           AAHYTPN GDTT+L+  DV+K+D G H+NGRI
Sbjct: 177 AAHYTPNAGDTTILKEKDVMKVDIGVHVNGRI 208


>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 49.6 bits (113), Expect = 3e-07
 Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
 Frame = +2

Query: 185 TSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIRNWIKPGMTMIDIC----EELEKTARR 352
           TSE        + +   + + A E  +   K +    +PG  + DIC    E L +  ++
Sbjct: 7   TSETAVDYSLSNPETVNKYKIAGEVSQNVIKKVVELCQPGAKIYDICVRGDELLNEAIKK 66

Query: 353 LIGEDGLKAGLAFPTGCSRNHCAAHYTPNTGD---TTVLEYDDVVKIDFGTHING 508
           +        G+AFPT  S N  AAH +P   D      L+  DVVKI  G HI+G
Sbjct: 67  VYRTKDAYKGIAFPTAVSPNDMAAHLSPLKSDPEANLALKSGDVVKILLGAHIDG 121


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
 Frame = +2

Query: 380 GLAFPTGCSRNHCAAHYTP-------NTGDTTVLEYDDVVKIDFGTHING 508
           G+A PT    N+CA +Y P          ++  L+  DV KI  G H +G
Sbjct: 72  GIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDG 121


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 307 HARLDPIADVFSCLPVGFSSMS 242
           H  LD I DVFSC PV   + S
Sbjct: 194 HILLDFILDVFSCSPVNLKAQS 215


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 218 HKDIYQEIRHAAEAHRQTRKHIRNWIKPGMTMIDIC 325
           + D+  E+ +  E+H +T +H +  + P   +ID+C
Sbjct: 386 YSDLRFELLYT-ESHSRTLRHEKRHVSPKSPLIDVC 420


>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +3

Query: 69  SHLLYQ*RNYFLMETFLRVKLWTMVLL--RVLMRELQKIVLQVRRKELLIDYIKIFIRRS 242
           SHL     +YFL++ F+RV     ++L  +   ++    VL    K L + Y++   +  
Sbjct: 286 SHLHDNLNSYFLLKFFVRVLFGVCMILIWKSFAKQALLAVLPPIFKSLRLSYLEPKSQSE 345

Query: 243 DMLLKPTGRQENTSAIGSSL 302
             +   TG   +   IG+ L
Sbjct: 346 KGIRAATGSNHSPGNIGTEL 365


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -2

Query: 287 CGCVFLSACGLQQHV*SPDKYLYVIYQELFSPHL*NDFLQFSHQYPQ 147
           C CV + +   QQ +  P  ++Y +     +  +  +FL F H YPQ
Sbjct: 351 CYCVEVHS---QQTILVPSGWIYAVVTPCDTISIAGNFLTFLHIYPQ 394


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 185 TSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIRNW 292
           T+      D L +D   E+    + + QT+K  RNW
Sbjct: 377 TNFNNEVYDTLREDSIPEVVIVKKTYPQTKKKNRNW 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,129,296
Number of Sequences: 5004
Number of extensions: 43926
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)