Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30557
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)         95   2e-20
SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)               55   3e-08
SB_21019| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_2124| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0055)            28   4.0  
SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0)                      28   5.3  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    27   6.9  
SB_47898| Best HMM Match : Extensin_2 (HMM E-Value=0.88)               27   9.2  

>SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)
          Length = 708

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 46/70 (65%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
 Frame = +2

Query: 311 MIDICEELEKTARRLIGE-DGLK-AGLAFPTGCSRNHCAAHYTPNTGDTTVLEYDDVVKI 484
           + D+ E +++T      E DG    GLAFPTGCS NHCAAHYTPN GD TVL YDDV KI
Sbjct: 82  LCDVGEAIQETMESYEVELDGKTYKGLAFPTGCSLNHCAAHYTPNAGDKTVLSYDDVCKI 141

Query: 485 DFGTHINGRI 514
           DFGTHINGRI
Sbjct: 142 DFGTHINGRI 151



 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 39/44 (88%), Positives = 39/44 (88%)
 Frame = +2

Query: 383 LAFPTGCSRNHCAAHYTPNTGDTTVLEYDDVVKIDFGTHINGRI 514
           LAFPTGCS NHCAAHYTPN GD TVL YDDV KIDFGTHINGRI
Sbjct: 2   LAFPTGCSLNHCAAHYTPNAGDKTVLSYDDVCKIDFGTHINGRI 45


>SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)
          Length = 465

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
 Frame = +2

Query: 302 GMTMIDICEE-----LEKTARRLIGEDGLKAGLAFPTGCSRNHCAAHYTPNTGDTTV-LE 463
           G T   +CE+     LE+T +    E  LK G+AFPT  S N+C  H++P   +  + L 
Sbjct: 46  GTTARTLCEKGDALILEETDKVYKKEKELKKGIAFPTCISVNNCVCHFSPLLSEPDITLN 105

Query: 464 YDDVVKIDFGTHINGRI 514
             D+VKIDFG HI+G I
Sbjct: 106 DGDLVKIDFGVHIDGFI 122


>SB_21019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 331 LFTNIYHCHARLDPIADVFSCLPVGFSSMSDLLINIFM*SIKSSFL 194
           +FTN Y CH  L  I D FSC     S+ S   + IF+ S K  ++
Sbjct: 77  IFTNCYDCHDSL-KILDPFSC-SSALSTKSPAFLAIFIASEKLFYI 120


>SB_2124| Best HMM Match : F5_F8_type_C (HMM E-Value=0.0055)
          Length = 596

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 316 RYL*RVREDCETSYWGRWAQSRSGFPHRMQP 408
           +YL RV  D  TS W +WA +  G+   + P
Sbjct: 277 KYLWRVCGDFTTSRWQQWASTCGGYVETLAP 307


>SB_35344| Best HMM Match : PRP1_N (HMM E-Value=0)
          Length = 437

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +2

Query: 122 GQIMDHGPAEGIDERTAKNRFTSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIR 286
           G +   GP +  DE  A + + S +KR  DR  +   Q+++   E +RQ R  I+
Sbjct: 73  GSLFSSGPYDKDDEE-ADSIYESIDKRMDDRRKERREQKLKEEMERYRQERPKIQ 126


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +2

Query: 179  RFTSEEKRALDRLHKDIYQEIRHAAEAHR---QTRKHIRNWIKPGMTMIDICEELEKTAR 349
            R T +EK+  D L KD+Y+  +  ++  R   Q+R  I ++ K  + +I+I     +  R
Sbjct: 3608 RETEQEKKLHDGLKKDLYEAEKQKSDLQRELNQSRYEIESF-KSKVELIEIENRKWEEER 3666

Query: 350  RLIGED 367
            R + E+
Sbjct: 3667 RKLKEE 3672


>SB_47898| Best HMM Match : Extensin_2 (HMM E-Value=0.88)
          Length = 490

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 167 TAKNRFTSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIR 286
           T  +R+T +  +   R+H+   +  +   + HR TRKH +
Sbjct: 416 TRIHRYTRKHAKIPTRIHRYTRKHAKIPTQIHRYTRKHAK 455



 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 167 TAKNRFTSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIR 286
           T  +R+T +  +   R+H+   +  +   + HR TRKH +
Sbjct: 444 TQIHRYTRKHAKIPTRIHRYTRKHAKIPTQIHRYTRKHAK 483


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,908,117
Number of Sequences: 59808
Number of extensions: 340628
Number of successful extensions: 1079
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)