Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30557
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117205-8|CAB55167.1|  444|Caenorhabditis elegans Hypothetical ...   200   4e-52
AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical ...    57   9e-09
Z47357-5|CAA87424.1|  446|Caenorhabditis elegans Hypothetical pr...    32   0.28 
Z81029-3|CAB02699.2|  207|Caenorhabditis elegans Hypothetical pr...    30   0.85 
U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone...    30   1.1  
AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear recep...    30   1.1  
AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear recep...    30   1.1  
AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear recep...    30   1.1  
U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U28992-5|AAO38602.1| 1185|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ...    29   2.0  
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel...    29   2.0  
Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t pro...    27   8.0  
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    27   8.0  
AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AL117205-8|CAB55167.1|  444|Caenorhabditis elegans Hypothetical
           protein Y116A8A.9 protein.
          Length = 444

 Score =  200 bits (489), Expect = 4e-52
 Identities = 90/146 (61%), Positives = 115/146 (78%), Gaps = 2/146 (1%)
 Frame = +2

Query: 83  PVAELFPDGNFPEGQIMDHGP--AEGIDERTAKNRFTSEEKRALDRLHKDIYQEIRHAAE 256
           P+ E FPDG FP G  +D  P   +G D R A +R ++EEK+ALD  +++++Q+ R +AE
Sbjct: 81  PIDEQFPDGKFPHG--IDESPYYLKGKDGRVATDRESNEEKKALDISYEEVWQDYRRSAE 138

Query: 257 AHRQTRKHIRNWIKPGMTMIDICEELEKTARRLIGEDGLKAGLAFPTGCSRNHCAAHYTP 436
           AHRQ RK++++WIKPGMTMI+ICE LE T+RRLI E GL+AGLAFPTGCS NHCAAHYTP
Sbjct: 139 AHRQVRKYVKSWIKPGMTMIEICERLETTSRRLIKEQGLEAGLAFPTGCSLNHCAAHYTP 198

Query: 437 NTGDTTVLEYDDVVKIDFGTHINGRI 514
           N GDTTVL+Y DV KID+G H+ GR+
Sbjct: 199 NAGDTTVLQYGDVCKIDYGIHVRGRL 224


>AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical
           protein W08E12.7 protein.
          Length = 391

 Score = 56.8 bits (131), Expect = 9e-09
 Identities = 36/95 (37%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
 Frame = +2

Query: 248 AAEAHRQTRKHIRNWIKPGMTMIDICEE-----LEKTARRLIGEDGLKAGLAFPTGCSRN 412
           AAE      K +   IK G    D+C+      LEKT +    E     G+A PT  S +
Sbjct: 35  AAEITNAVLKEVLANIKEGAIAGDLCDLGDKLILEKTGKLYKKEKNFTKGIAMPTCISID 94

Query: 413 HCAAHYTPNTGDT-TVLEYDDVVKIDFGTHINGRI 514
           +C  HYTP   +   VL+   VVK+D GTHI+G I
Sbjct: 95  NCICHYTPLKSEAPVVLKNGQVVKVDLGTHIDGLI 129


>Z47357-5|CAA87424.1|  446|Caenorhabditis elegans Hypothetical
           protein ZK1128.5 protein.
          Length = 446

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +2

Query: 77  TIPVAELFPDGNFPEGQIMDHGPAEGIDERTA-KNRFTSEEKRALDRLHKDIYQEIRHAA 253
           ++P+ EL  +G   +   M H P  G + R A K +F+S  K  +  L KDIY    H  
Sbjct: 130 SVPMWELRVEGRLLDD--MQH-PTVGANPRPAPKRKFSSFFKSLVIELDKDIYGPDNHLV 186

Query: 254 EAHR 265
           E HR
Sbjct: 187 EWHR 190


>Z81029-3|CAB02699.2|  207|Caenorhabditis elegans Hypothetical
           protein C01A2.4 protein.
          Length = 207

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 176 NRFTSEEKRALDRLHKDIYQEIRH-AAEAHRQTRKHI 283
           NR    ++R +DR  K++ QEI+  AA+ H    +H+
Sbjct: 24  NRDLESDRRQMDRREKELEQEIKKLAAKGHNDAARHL 60


>U61950-6|AAC24291.1|  528|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 46, isoform a protein.
          Length = 528

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 239 SPDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 96
           +P+ Y  ++ Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 15  TPNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 62


>AF273791-1|AAG15139.1|  525|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 525

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 239 SPDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 96
           +P+ Y  ++ Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 12  TPNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 59


>AF273790-1|AAG15138.1|  534|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 534

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 239 SPDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 96
           +P+ Y  ++ Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 21  TPNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 68


>AF273787-1|AAG15135.1|  527|Caenorhabditis elegans nuclear receptor
           NHR-46 protein.
          Length = 527

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 239 SPDKYLYVIYQELFSPHL*NDFLQFSHQYPQQDHGP*FDPQESFHQEI 96
           +P+ Y  ++ Q+   PH  + F   +HQ       P   P  S HQ I
Sbjct: 14  TPNPYPPIVQQQQQPPHTSSSFFNTNHQLNSHYSSPIHQPPTSLHQPI 61


>U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical
           protein T05C1.4b protein.
          Length = 1163

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 280 HPQLDQAWHDNDRYL*RVREDCETSYWGRWAQSRSGFPH 396
           +P+LD AW+ ND Y+ + R + + +         SG PH
Sbjct: 121 YPRLDNAWYKNDGYIWKKRTNGKQNREDHLNLKISGHPH 159


>U28992-5|AAO38602.1| 1185|Caenorhabditis elegans Hypothetical
           protein T05C1.4a protein.
          Length = 1185

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 280 HPQLDQAWHDNDRYL*RVREDCETSYWGRWAQSRSGFPH 396
           +P+LD AW+ ND Y+ + R + + +         SG PH
Sbjct: 121 YPRLDNAWYKNDGYIWKKRTNGKQNREDHLNLKISGHPH 159


>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
           helicase-4 protein.
          Length = 1156

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/29 (58%), Positives = 18/29 (62%)
 Frame = +2

Query: 341 TARRLIGEDGLKAGLAFPTGCSRNHCAAH 427
           TAR+L  E GLK GLAF  G SRN    H
Sbjct: 833 TARQLTYETGLKCGLAF-GGYSRNANVQH 860


>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
           helicase protein 4 protein.
          Length = 1156

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/29 (58%), Positives = 18/29 (62%)
 Frame = +2

Query: 341 TARRLIGEDGLKAGLAFPTGCSRNHCAAH 427
           TAR+L  E GLK GLAF  G SRN    H
Sbjct: 833 TARQLTYETGLKCGLAF-GGYSRNANVQH 860


>Z97190-1|CAB10024.1| 1111|Caenorhabditis elegans Hypothetical
           protein H05G16.1 protein.
          Length = 1111

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 179 RFTSEEKRALDRLHKDIYQEIRHAAEAHRQTRKHIRNWIK 298
           + + + K+ L +LH D YQ ++   E   +TR   +N+ K
Sbjct: 277 KLSFKRKKLLVKLHPDSYQYLKETVEFSFETRDECKNFWK 316


>U23523-11|AAP68942.2|  324|Caenorhabditis elegans Troponin t
           protein 2, isoform b protein.
          Length = 324

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 71  PPTIPVAELFPDGNFPEGQIMDHGPAEGID 160
           PP  P+    PD  F +G +    P EG +
Sbjct: 280 PPVNPIPLQVPDKEFEDGPVQSQNPNEGAE 309


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 71  PPTIPVAELFPDGNFPEGQIMDHGPAEGID 160
           PP  P+    PD  F +G +    P EG +
Sbjct: 384 PPVNPIPLQVPDKEFEDGPVQSQNPNEGAE 413


>AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical
           protein Y71A12B.4 protein.
          Length = 1913

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
 Frame = +2

Query: 239 IRHAAEA--HRQTRKHIRNWIKPGMTMIDICEELEKTARRLIGEDGLKAGLAFPTG---- 400
           ++H +E     Q ++H+ +    G T +    E+E+      GED     L    G    
Sbjct: 735 LKHLSEVLTQEQLKEHVNHRTNDGFTALHYAAEIEQRQLHFPGEDAKLVNLLIDYGGMVE 794

Query: 401 ---CSRNHCAAHYTPNTGDTTVL 460
               + N  A H    +G+  VL
Sbjct: 795 MPSLNANETAMHMAARSGNQAVL 817


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,821,077
Number of Sequences: 27780
Number of extensions: 255645
Number of successful extensions: 881
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)