Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30556
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41277-3|AAA82474.1|  154|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ...    29   2.0  
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist...    28   3.4  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    28   3.4  
U41277-4|AAA82475.1|  277|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear recep...    27   6.0  
AF098985-5|AAC67418.1|   99|Caenorhabditis elegans Hypothetical ...    27   6.0  

>U41277-3|AAA82474.1|  154|Caenorhabditis elegans Hypothetical
           protein C06E4.4 protein.
          Length = 154

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 248 NEINPDGSYTYFYETNNGIAA-QEQGVPRNLGGNPPAVP 361
           N +NP    T F E   G+++ Q Q    N+G NP A+P
Sbjct: 98  NTVNPGVVATGFMEVATGLSSEQSQTFYDNVGSNPSAIP 136


>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
           protein F52G3.1 protein.
          Length = 1172

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/56 (35%), Positives = 22/56 (39%)
 Frame = +2

Query: 341 GNPPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAIPTSPPVPEQIARAL 508
           G  P  PVV QG   W+  +  P      A E    PT  A    PP P Q A  L
Sbjct: 70  GQDPTTPVVPQGGTGWSKSDN-PNG----AAEPPQTPTNQAPAVPPPPPPQPANDL 120


>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
            protein 1 protein.
          Length = 1852

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = +2

Query: 257  NPDGSYTYFYETNNGIAAQEQGVPRN-LGGNPPAVPVVAQGSFSWTSPEGVPISVNYVAD 433
            N DG  + F E   G +    G P   L    P+   ++ G +S +SP+    S +Y   
Sbjct: 1535 NTDGGASPFNE--GGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPT 1592

Query: 434  ENGYQPTGNAIPTSPPVPEQIARALAY 514
               Y PT  A   SP  P     + +Y
Sbjct: 1593 SPSYSPTSPAAGQSPVSPSYSPTSPSY 1619



 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 344  NPPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 478
            +P A       S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1600 SPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1645



 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 377  SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 478
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1618 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1652


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = +2

Query: 257  NPDGSYTYFYETNNGIAAQEQGVPRN-LGGNPPAVPVVAQGSFSWTSPEGVPISVNYVAD 433
            N DG  + F E   G +    G P   L    P+   ++ G +S +SP+    S +Y   
Sbjct: 1542 NTDGGASPFNE--GGWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPT 1599

Query: 434  ENGYQPTGNAIPTSPPVPEQIARALAY 514
               Y PT  A   SP  P     + +Y
Sbjct: 1600 SPSYSPTSPAAGQSPVSPSYSPTSPSY 1626



 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 344  NPPAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 478
            +P A       S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1607 SPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1652



 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 377  SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 478
            S+S TSP   P S +Y      Y PT  +  PTSP
Sbjct: 1625 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1659


>U41277-4|AAA82475.1|  277|Caenorhabditis elegans Hypothetical
           protein C06E4.3 protein.
          Length = 277

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +2

Query: 248 NEINPDGSYTYFYETNNGIAAQE-QGVPRNLGGNPPAVPVVAQGSFSWTSPEGVPISVNY 424
           N +NP    T F+E+  G++ +E Q     +G N  A+P    G      PE +  ++ +
Sbjct: 189 NTVNPGVVATGFHESCTGLSTEESQKFYDKVGANKSAIPCGFSG-----RPEHIAKAIAF 243

Query: 425 VADEN 439
           +AD +
Sbjct: 244 LADRD 248


>Z93374-3|CAB07558.2|  363|Caenorhabditis elegans Hypothetical
           protein C06C6.4 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 372 RAHSPGHLLKVFPSASITSPTRTDTSPLVMLSPLPHQCLSRS 497
           R   P  L      AS++S + + + P + +SPLP+  +SR+
Sbjct: 77  REKHPKKLKMELAHASLSSASSSQSPPSLPISPLPYHIVSRN 118


>AF273815-1|AAG15164.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-63 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +3

Query: 372 RAHSPGHLLKVFPSASITSPTRTDTSPLVMLSPLPHQCLSRS 497
           R   P  L      AS++S + + + P + +SPLP+  +SR+
Sbjct: 79  REKHPKKLKMELAHASLSSASSSQSPPSLPISPLPYHIVSRN 120


>AF098985-5|AAC67418.1|   99|Caenorhabditis elegans Hypothetical
           protein C08G5.5 protein.
          Length = 99

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 395 PEGVP--ISVNYVADENGYQPTGNAIPTSPPVPEQIARALAY 514
           P G+P  +S +Y A      PT    P++PP+P   +   AY
Sbjct: 44  PSGLPPMVSESYSAPYAQAPPTSTGYPSAPPMPRPSSPPPAY 85


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,016,230
Number of Sequences: 27780
Number of extensions: 276963
Number of successful extensions: 939
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)