Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30554
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1; ...    45   9e-04
UniRef50_Q6LFB4 Cluster: Putative uncharacterized protein; n=2; ...    34   1.7  
UniRef50_Q6KZ09 Cluster: Membrane associated protein; n=4; Therm...    33   2.9  
UniRef50_O29640 Cluster: Putative uncharacterized protein; n=1; ...    32   6.8  
UniRef50_Q4YN35 Cluster: Putative uncharacterized protein; n=3; ...    32   8.9  

>UniRef50_Q86QT5 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 77

 Score = 45.2 bits (102), Expect = 9e-04
 Identities = 22/25 (88%), Positives = 22/25 (88%)
 Frame = +1

Query: 442 LAD*AGFVVPQSINKRPKLLYKINL 516
           LAD A FVVPQSINKRPK LYKINL
Sbjct: 22  LADPADFVVPQSINKRPKHLYKINL 46


>UniRef50_Q6LFB4 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 2528

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
 Frame = +3

Query: 195 KIINSFCNCNVCYTIQF*FLNDLWKIRSCKFTDYVGK*FKILANNFVQ-FNEFYINIDSV 371
           K+IN+  N ++ Y   +   ND W +++  +   V   FKI  NNF   +N F++NI+  
Sbjct: 277 KLINNNMNGSIEYNHYY-NNNDKWNLKNDIYLSKVRDIFKIQYNNFSNTYNSFFLNIN-- 333

Query: 372 IFLILFKYN*RTTFGKKMSFL*IISGLGRLRRASID 479
              I++K N      +KM +L + + +  L++  I+
Sbjct: 334 ---IIYKENKDDVRLQKMLYLCVYNIIYLLKKIKIN 366


>UniRef50_Q6KZ09 Cluster: Membrane associated protein; n=4;
           Thermoplasmatales|Rep: Membrane associated protein -
           Picrophilus torridus
          Length = 493

 Score = 33.5 bits (73), Expect = 2.9
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 222 NVCYTIQF*FLNDLWKIRSCKFTDYVGK*FKILANNFVQFNE 347
           N+ YT+ F F+N+ WKI + +    VG  F   A  F ++NE
Sbjct: 310 NISYTLNFVFMNNSWKIYN-EVWHIVGSGFISYAQEFAEYNE 350


>UniRef50_O29640 Cluster: Putative uncharacterized protein; n=1;
           Archaeoglobus fulgidus|Rep: Putative uncharacterized
           protein - Archaeoglobus fulgidus
          Length = 129

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
 Frame = +3

Query: 189 IFKIINSFCNCNVCYTIQF*FLNDLWKIRSCKFTDYVGK*FKILANNFVQFNEFYINIDS 368
           ++ I++S     +   +QF  LND W  R  + +D     F++L +N  +    ++NI S
Sbjct: 34  VYYIVSSILAIEIAIVVQF-ILNDRWTFRDKRSSDLRLFLFRLLKSNLWRVAGIFVNI-S 91

Query: 369 VIFLI--LFK 392
           +++++  LFK
Sbjct: 92  ILYVLTELFK 101


>UniRef50_Q4YN35 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 792

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = -2

Query: 377 KNHRINIDIKFIKLHKIISEDFKLFT--YIICELT*SNFP*VIQKLKLNCITDITITKTI 204
           KN + NIDI ++K +   +    + T  YI+ E+  +N   ++ K KLN   D+T T T 
Sbjct: 206 KNAKTNIDIIYLKKNIENNNVISIETCKYIVVEMFSNNI--IVDKEKLNKEIDVTFTNTE 263

Query: 203 NY 198
           N+
Sbjct: 264 NH 265


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 386,036,053
Number of Sequences: 1657284
Number of extensions: 6510389
Number of successful extensions: 13269
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13266
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)