Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30554
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9588| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.98 
SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)                29   3.0  
SB_12596| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.0  
SB_389| Best HMM Match : zf-C2H2 (HMM E-Value=1.8e-29)                 27   6.9  
SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_9588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 70  HSFVVLTITIIKVHVCFLMITYTNVIININ 159
           H    +TITIIK+ +  + IT T + ININ
Sbjct: 65  HQITTITITIIKITIT-ITITITTIAININ 93


>SB_39988| Best HMM Match : NAD_kinase (HMM E-Value=1.8)
          Length = 581

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/53 (26%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
 Frame = +1

Query: 76  FVVLTITIIKVHVCFLMITYTNVIININ-EKLSFVTERLSSK*LIVFVIVMSV 231
           F ++T TII + +   +IT T +I+NI+    + +T  L++   I+ ++++++
Sbjct: 164 FTIITTTIIIIVIITTIITTTVIIVNISIITTTIITIILTTIITIIIIVIVNI 216


>SB_12596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/74 (24%), Positives = 37/74 (50%)
 Frame = +1

Query: 28  MIGVFFSSFDCFHLHSFVVLTITIIKVHVCFLMITYTNVIININEKLSFVTERLSSK*LI 207
           +I V     +  H H +    ITII + +  ++I  T  +I+I   +SFV        +I
Sbjct: 128 IINVITIMINHHHCHHYYTAIITIIIIVIIMIIIIITINVISITAIISFV--------II 179

Query: 208 VFVIVMSVIQFSFN 249
           + + +++VI+ + +
Sbjct: 180 IIITIINVIKITMS 193


>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 58  CFHLHSFVVLTITIIKVHVCFLMITYTNVIININEKLSFVTERLSSK*LI-VFVIVMSVI 234
           C H H   V+ I +I + +  +++   N+II I   +  +T  +    +I V + +M++I
Sbjct: 35  CHHYHHISVIIIAVIIITLLVVVVVVVNIIIIIIIVVIIITTSVIIITIISVIITIMTII 94

Query: 235 QFS 243
             S
Sbjct: 95  SSS 97


>SB_389| Best HMM Match : zf-C2H2 (HMM E-Value=1.8e-29)
          Length = 383

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +3

Query: 138 ECYNKYK*KTIVCYRTPIFKIINSFCNCNVCYTIQF 245
           E Y++Y      C + P++      CNC  C +  F
Sbjct: 150 EEYSRYSTSRDECMQMPVYYTDGRVCNCQYCVSTMF 185


>SB_39863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2978

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 76   FVVLTITIIKVHVCFLMITYTNVIININ 159
            F ++T TII + +   +IT T +I+NI+
Sbjct: 1978 FTIITTTIIIIVIIITIITTTVIIVNIS 2005


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,984,602
Number of Sequences: 59808
Number of extensions: 201662
Number of successful extensions: 323
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)