Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30554
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79596-4|CAB01856.2|  554|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z79596-3|CAI79132.1|  561|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AL110482-9|CAB60340.3|  372|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z79596-4|CAB01856.2|  554|Caenorhabditis elegans Hypothetical
           protein C02C6.2b protein.
          Length = 554

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 222 NVCYTIQF*FLNDLWKIRSCK-FTD 293
           N CY I F +L D+ K R C+ FTD
Sbjct: 514 NDCYQIAFCYLKDMAKRRQCRVFTD 538


>Z79596-3|CAI79132.1|  561|Caenorhabditis elegans Hypothetical
           protein C02C6.2a protein.
          Length = 561

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 222 NVCYTIQF*FLNDLWKIRSCK-FTD 293
           N CY I F +L D+ K R C+ FTD
Sbjct: 521 NDCYQIAFCYLKDMAKRRQCRVFTD 545


>AL110482-9|CAB60340.3|  372|Caenorhabditis elegans Hypothetical
           protein Y39G8B.4 protein.
          Length = 372

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = -1

Query: 411 RSCVSY-I*IVSKKSQNQY*YKIH*IAQNY*RGF*IIYLHNL*TYMIEFSI----SHSKI 247
           RSC SY +     KS+      I   +Q +   F I++  N  +Y+   SI    +   +
Sbjct: 155 RSCASYFLEDYENKSRTWIALLIIFFSQTFTMIFSIVFFFNYLSYVFGISIIAISNIGAV 214

Query: 246 KTELYNRHYNYK 211
              LY+RHYN K
Sbjct: 215 MLMLYSRHYNQK 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,510,179
Number of Sequences: 27780
Number of extensions: 173312
Number of successful extensions: 351
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)