Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30554
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02910.1 68418.m00234 F-box family protein similar to ribosom...    29   2.5  
At1g03960.2 68414.m00382 calcium-binding EF hand family protein ...    28   4.3  
At1g03960.1 68414.m00381 calcium-binding EF hand family protein ...    28   4.3  
At2g17310.1 68415.m02000 F-box family protein contains F-box dom...    27   7.5  

>At5g02910.1 68418.m00234 F-box family protein similar to ribosomal
           RNA apurinic site specific lyase [Triticum aestivum]
           GI:6505722; contains F-box domain Pfam:PF00646
          Length = 458

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 276 IEFSISHSKIKTELYNRHYNYKNY 205
           IEF+ISH+  K  L +R Y  +NY
Sbjct: 97  IEFAISHNAEKLSLESRDYRVRNY 120


>At1g03960.2 68414.m00382 calcium-binding EF hand family protein
           contains Pfam profile: PF00036 EF hand
          Length = 389

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 320 EDFKLFTYIICELT*SNFP*VIQKLKLNCITDITITKTINYFEDRRSVTND 168
           ++FK  T  +C+L     P + +K+  NC   +T    I Y+ D   +T D
Sbjct: 16  DEFKSITKQVCKLPSFLSPALFRKIDPNCTDIVTRDAFIKYWIDGNMLTMD 66


>At1g03960.1 68414.m00381 calcium-binding EF hand family protein
           contains Pfam profile: PF00036 EF hand
          Length = 529

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 320 EDFKLFTYIICELT*SNFP*VIQKLKLNCITDITITKTINYFEDRRSVTND 168
           ++FK  T  +C+L     P + +K+  NC   +T    I Y+ D   +T D
Sbjct: 156 DEFKSITKQVCKLPSFLSPALFRKIDPNCTDIVTRDAFIKYWIDGNMLTMD 206


>At2g17310.1 68415.m02000 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = -2

Query: 356 DIKFIKLHKIISEDFKLFTYIICELT*SNFP*VIQKLK---LNCITDITITKTINYFEDR 186
           D  +I++    +EDFK F  + C+++ S    V+   K    + +   ++T+ I  +  +
Sbjct: 217 DEYYIRIFDFSTEDFKPFCLLPCQMSHSTDELVLAVYKGDRFSLLKQCSVTREIGVWVTK 276

Query: 185 RSVTND 168
             ++ND
Sbjct: 277 ERISND 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,392,884
Number of Sequences: 28952
Number of extensions: 139168
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)