Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30552
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58300.1 68418.m07298 leucine-rich repeat transmembrane prote... 29 1.4
At2g04900.1 68415.m00509 expressed protein 29 1.9
At1g34320.1 68414.m04259 expressed protein contains Pfam domain ... 29 1.9
At3g11310.1 68416.m01375 hypothetical protein 28 4.3
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 28 4.3
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 28 4.3
At1g76050.2 68414.m08832 pseudouridine synthase family protein c... 27 9.9
At1g76050.1 68414.m08831 pseudouridine synthase family protein c... 27 9.9
>At5g58300.1 68418.m07298 leucine-rich repeat transmembrane protein
kinase, putative
Length = 654
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = -2
Query: 209 KVGISFHKGANRLN---GERFSHGNVNWSSVMETGCAITSLSRAGKAVTVAKPAKAMKTA 39
K+ +S KG L+ G +FSHGN+ S+V+ + +S G +A P M+ A
Sbjct: 461 KITLSAAKGIAHLHAAGGPKFSHGNIKSSNVIMKQESDACISDFGLTPLMAVPIAPMRGA 520
Query: 38 KRRGENI 18
R +
Sbjct: 521 GYRAPEV 527
>At2g04900.1 68415.m00509 expressed protein
Length = 128
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -2
Query: 512 TRSVFFVLSTFSLIGAVTTRYPSEVSSAVTSAALEFTG 399
T S++ ++ T +L+ A +T+YP+ +T+ + F+G
Sbjct: 58 TASLYHLVHTAALVSAPSTKYPNIFGGLLTAGIVAFSG 95
>At1g34320.1 68414.m04259 expressed protein contains Pfam domain
PF05003: protein of unknown function (DUF668)
Length = 657
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 379 FFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNT 504
F H +N++A+D+ + G +P++ENVD K+T
Sbjct: 19 FAHVNGHHLNNNASDLNSHSGESGLKDDPSPVTENVDDNKHT 60
>At3g11310.1 68416.m01375 hypothetical protein
Length = 539
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Frame = +1
Query: 325 VQGSQEAKEDDHDVFASQFFHTYSLPVNSSAADVTAELT-------SDGYLVVTAPISEN 483
V GS+ +DDH + F + P +SS D+ +T D Y+V+ +
Sbjct: 339 VPGSEGGADDDHHIVMDHHFESPHDPASSSEIDLNEPVTGSEGGADDDHYIVLNHLVESP 398
Query: 484 VDKTKNTE 507
D+ ++E
Sbjct: 399 HDRAPSSE 406
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 464 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 378
V R PSE++S++ +A L T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 464 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 378
V R PSE++S++ +A L T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564
>At1g76050.2 68414.m08832 pseudouridine synthase family protein
contains Pfam profiles: PF00849 RNA pseudouridylate
synthase, PF01479: S4 domain
Length = 430
Score = 26.6 bits (56), Expect = 9.9
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = -2
Query: 491 LSTFSLIGAVTTRYPSEVSSAVTSAALEFTGRL*VWKNWLANTSWSSSLASCDPWTKIKS 312
L +FSL A + RYPS SS++ S F ++ N++ +S +L +C P T+I
Sbjct: 7 LPSFSLTTAKSLRYPSSPSSSL-SIFFSFFPKV---SNFVRASSGIPNLVACSP-TEIII 61
Query: 311 P 309
P
Sbjct: 62 P 62
>At1g76050.1 68414.m08831 pseudouridine synthase family protein
contains Pfam profiles: PF00849 RNA pseudouridylate
synthase, PF01479: S4 domain
Length = 313
Score = 26.6 bits (56), Expect = 9.9
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = -2
Query: 491 LSTFSLIGAVTTRYPSEVSSAVTSAALEFTGRL*VWKNWLANTSWSSSLASCDPWTKIKS 312
L +FSL A + RYPS SS++ S F ++ N++ +S +L +C P T+I
Sbjct: 7 LPSFSLTTAKSLRYPSSPSSSL-SIFFSFFPKV---SNFVRASSGIPNLVACSP-TEIII 61
Query: 311 P 309
P
Sbjct: 62 P 62
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,218,619
Number of Sequences: 28952
Number of extensions: 153004
Number of successful extensions: 473
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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