Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30551
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor...    74   2e-12
UniRef50_Q5KFB2 Cluster: Expressed protein; n=2; Filobasidiella ...    34   1.7  
UniRef50_A7HT58 Cluster: Putative uncharacterized protein; n=1; ...    33   2.9  
UniRef50_UPI000155CCD2 Cluster: PREDICTED: similar to elongation...    33   5.1  
UniRef50_Q8VJA7 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_P03218 Cluster: Probable membrane glycoprotein; n=5; Ly...    32   8.9  

>UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor;
           n=1; Bombyx mori|Rep: Larval cuticle protein LCP-30
           precursor - Bombyx mori (Silk moth)
          Length = 239

 Score = 74.1 bits (174), Expect = 2e-12
 Identities = 56/139 (40%), Positives = 62/139 (44%)
 Frame = +2

Query: 98  RVYSTVSPFVYKXGRYVADPGRYDPSRDNFWAVTFPDNXWCLQR*PVETVVPXVASXLDX 277
           RVYSTVSPFVYK GRYVADPGRYDPSRDN      PDN         +            
Sbjct: 29  RVYSTVSPFVYKPGRYVADPGRYDPSRDNSGRY-IPDNSGAYNGDRGDR--GAAGGFYTG 85

Query: 278 XXXXXXXXXXXXXXXXXSAKYLGXCLQGXPXLXXLPVREALPFPVPVTPTYRLPXKGGXT 457
                             +KYLG   +G   +  LPV +    PVPVTPTY        T
Sbjct: 86  SGTAGGPGGAYVGTKEDLSKYLGDAYKG-SSIVPLPVVKP-TIPVPVTPTY--VASKVVT 141

Query: 458 PHTXAXKGXXXPAAPGYDY 514
           P   A K    P+  GYDY
Sbjct: 142 PTYVASK-VVPPSGAGYDY 159



 Score = 61.3 bits (142), Expect = 1e-08
 Identities = 28/28 (100%), Positives = 28/28 (100%)
 Frame = +1

Query: 13 MRVFLAICLSLTVALAAETGKYTPFQYN 96
          MRVFLAICLSLTVALAAETGKYTPFQYN
Sbjct: 1  MRVFLAICLSLTVALAAETGKYTPFQYN 28


>UniRef50_Q5KFB2 Cluster: Expressed protein; n=2; Filobasidiella
           neoformans|Rep: Expressed protein - Cryptococcus
           neoformans (Filobasidiella neoformans)
          Length = 594

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 102 FTLLFLHSSISX-AAM*LIQAVMTPAATTSGPLHSPTTSGAYNGDPWRPWCRRWLLHWIP 278
           F+LL + +SI    A  L +  +TP A  + PLH PT++  +N  P  P    W + W P
Sbjct: 3   FSLLTVPTSILLFLAYILNEVTVTPIANFTVPLHRPTSTSTFNLLPAAPINGSWNVIWQP 62


>UniRef50_A7HT58 Cluster: Putative uncharacterized protein; n=1;
           Parvibaculum lavamentivorans DS-1|Rep: Putative
           uncharacterized protein - Parvibaculum lavamentivorans
           DS-1
          Length = 426

 Score = 33.5 bits (73), Expect = 2.9
 Identities = 28/96 (29%), Positives = 44/96 (45%)
 Frame = +3

Query: 57  GRRNWKVHSFPVQPEFTLLFLHSSISXAAM*LIQAVMTPAATTSGPLHSPTTSGAYNGDP 236
           GR+ W+V++ PV P+ T      ++  + M + ++  + A     P    T S A  G  
Sbjct: 187 GRKAWQVYARPV-PDGTPTDRRIALVVSGMGISESATSHAIDVLPP--EVTLSFAPYGTG 243

Query: 237 WRPWCRRWLLHWIPVLLEVPEEPYVRDQGGPQQNTL 344
            + W  R       VLLE+P EP+   Q  P  +TL
Sbjct: 244 LQGWIDRARAAGHEVLLELPMEPFGYPQNDPGPHTL 279


>UniRef50_UPI000155CCD2 Cluster: PREDICTED: similar to elongation of
           very long chain fatty acids (FEN1/Elo2, SUR4/Elo3,
           yeast)-like 1; n=1; Ornithorhynchus anatinus|Rep:
           PREDICTED: similar to elongation of very long chain
           fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1 -
           Ornithorhynchus anatinus
          Length = 514

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 18/41 (43%), Positives = 20/41 (48%)
 Frame = +2

Query: 383 PVREALPFPVPVTPTYRLPXKGGXTPHTXAXKGXXXPAAPG 505
           P   ALPFPVP+ PT      G   P T   +G   P APG
Sbjct: 24  PEFTALPFPVPMDPTAPASGPGQRVPGT--LRGKEIPLAPG 62


>UniRef50_Q8VJA7 Cluster: Putative uncharacterized protein; n=1;
           Mycobacterium tuberculosis|Rep: Putative uncharacterized
           protein - Mycobacterium tuberculosis
          Length = 71

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 150 LIQAVMT-PAATTSGPLHSPTTSGAYNGDPWRPWCRRWLL 266
           +IQ   T P AT   PL  PTT     G+P++ WC RW++
Sbjct: 8   IIQRPRTLPRATARRPLTRPTT-----GNPYQVWCLRWVI 42


>UniRef50_P03218 Cluster: Probable membrane glycoprotein; n=5;
           Lymphocryptovirus|Rep: Probable membrane glycoprotein -
           Epstein-Barr virus (strain B95-8) (HHV-4) (Human
           herpesvirus 4)
          Length = 248

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 192 PLHSPTTSGAYNGDPWRPWCRRWLLHWIPVLL 287
           P H P T G +  DPWRP  +   +HW  +L+
Sbjct: 186 PTHKPVTLGPFPIDPWRP--KTTWVHWALLLI 215


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 493,839,037
Number of Sequences: 1657284
Number of extensions: 9065701
Number of successful extensions: 24388
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24374
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)