Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30551
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi...    26   3.8  
SPAC630.11 |vps55||vacuolar sorting protein Vps55 |Schizosacchar...    26   3.8  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.1  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   6.7  

>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
           Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 893

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 258 WLLHWIPVLLE 290
           WLLHW P +LE
Sbjct: 621 WLLHWAPYILE 631


>SPAC630.11 |vps55||vacuolar sorting protein Vps55
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 56  WPPKLESTLLSSTTRVYSTVSPFVYKXGRYVADPGRY 166
           W P L + L +  T+ YST   F+ +  R + D GR+
Sbjct: 31  WYPLLIAPLPNLLTKKYSTSHDFLQEEDRNLLDFGRF 67


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 96  PEFTLLFLHSSISXAAM*LIQAVMTPAATTSGPLHSPTTS 215
           PE   +  HS+I+  A+ L + V   A T++  +H+PT S
Sbjct: 390 PEEASINEHSNITDEAVSLPEPVYPNAPTSAVSVHNPTIS 429


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = +3

Query: 162 VMTPAATTSGPLHSP--TTSGAYNGDPWRPW 248
           V+ P    +G   SP  +T GA   D W+PW
Sbjct: 176 VLLPMRFLAGVFGSPALSTGGASLADIWQPW 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,908,628
Number of Sequences: 5004
Number of extensions: 33905
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)