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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30551
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)                 30   0.98 
SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)                27   6.9  
SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
          Length = 420

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 19  VFLAICLSLTVALAAETGKYTPFQYNPSLLYCF 117
           VFL   +S+TV + +  GKY P  YN +++  F
Sbjct: 132 VFLVWGISITVGVLSVVGKYEPLAYNVTVIALF 164


>SB_29610| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
          Length = 1353

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/74 (22%), Positives = 26/74 (35%)
 Frame = +3

Query: 294  PEEPYVRDQGGPQQNTLGDAYKGIQXCXXCPFVKPXHFPCQSXPHTXCQXRGXTPHIRWP 473
            P++  V  Q  P+Q++     +  Q        KP H       H  C+     P  +  
Sbjct: 851  PQDKQVARQARPRQSSRKSKARPRQASRKTKTSKPQHKQASRPRHASCKTMASKPQDQDK 910

Query: 474  XRVGPXQRRRATTT 515
                P Q+ R T T
Sbjct: 911  QSTRPGQKSRKTRT 924


>SB_24118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 115 NSRVNSGCTGKECTFQFRRPAPLSETGRLPKRHAFP 8
           N+R  +  T     F   +PAP S      K +AFP
Sbjct: 779 NNRTTASVTATRPAFNGNKPAPTSRNNASDKANAFP 814


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,380,088
Number of Sequences: 59808
Number of extensions: 282916
Number of successful extensions: 853
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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