Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30551
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-36|AAG23464.2|  381|Caenorhabditis elegans Hypothetical...    30   1.1  
Z82256-1|CAB05113.1|  627|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   4.6  
U29097-5|AAA68413.1|  222|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>AC084197-36|AAG23464.2|  381|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.24 protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 210 TSGAYNGDPWRPWCRRWLLHWIPVLLEVPEEPYVR 314
           T+  ++ + W  W ++W  HW PV   + ++P +R
Sbjct: 113 TAALHDPEQWGDWDKKWYDHWSPVPYAI-DDPLLR 146


>Z82256-1|CAB05113.1|  627|Caenorhabditis elegans Hypothetical
           protein B0513.1 protein.
          Length = 627

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
 Frame = +3

Query: 156 QAVMTPAATTSGPL---HSPTTSGAYNGDPWRP 245
           Q  MTPAAT SG L    S  +    +GD W P
Sbjct: 414 QHAMTPAATRSGSLWDSQSSLSQSGNSGDQWSP 446


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 180 TTSGPLHSPTTSGAYNG 230
           TT GP H PTT+G  NG
Sbjct: 564 TTRGPTHRPTTAGWTNG 580



 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 180 TTSGPLHSPTTSGAYNG 230
           TT GP H PTT+G  NG
Sbjct: 762 TTRGPTHRPTTAGWTNG 778



 Score = 27.9 bits (59), Expect = 4.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 180 TTSGPLHSPTTSGAYNG 230
           TT GP H PTT+G  NG
Sbjct: 864 TTRGPTHRPTTAGWTNG 880


>U29097-5|AAA68413.1|  222|Caenorhabditis elegans Hypothetical
           protein F18C5.5 protein.
          Length = 222

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/45 (40%), Positives = 21/45 (46%)
 Frame = +2

Query: 332 AKYLGXCLQGXPXLXXLPVREALPFPVPVTPTYRLPXKGGXTPHT 466
           AK L   L   P L  LP+ + +P PVPV     LP      PHT
Sbjct: 80  AKPLPMTLPLLPPL--LPLPQFIPVPVPVLSAEGLPTLPTLAPHT 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,976,850
Number of Sequences: 27780
Number of extensions: 202156
Number of successful extensions: 563
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)