Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30551
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    28   0.066
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   10.0 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   10.0 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   10.0 

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 27.9 bits (59), Expect = 0.066
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 243 PWCRRWLLHWIPVLLEVPEEPY 308
           PW R+  L+W+P LL +   PY
Sbjct: 348 PWVRQVFLNWMPRLLMMRRTPY 369


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 246 WCRRWLLHWIPVLLEV 293
           W +   L W+P LL +
Sbjct: 294 WIKMLFLQWLPCLLRM 309


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 246 WCRRWLLHWIPVLLEV 293
           W +   L W+P LL +
Sbjct: 294 WIKMLFLQWLPCLLRM 309


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 246 WCRRWLLHWIPVLLEV 293
           W +   L W+P LL +
Sbjct: 294 WIKMLFLQWLPCLLRM 309


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 246 WCRRWLLHWIPVLLEV 293
           W +   L W+P LL +
Sbjct: 294 WIKMLFLQWLPCLLRM 309


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 246 WCRRWLLHWIPVLLEV 293
           W +   L W+P LL +
Sbjct: 294 WIKMLFLQWLPCLLRM 309


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 246 WCRRWLLHWIPVLLEV 293
           W +   L W+P LL +
Sbjct: 294 WIKMLFLQWLPCLLRM 309


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 246 WCRRWLLHWIPVLLEV 293
           W +   L W+P LL +
Sbjct: 362 WIKMLFLQWLPCLLRM 377


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 246 WCRRWLLHWIPVLLEV 293
           W +   L W+P LL +
Sbjct: 362 WIKMLFLQWLPCLLRM 377


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,629
Number of Sequences: 438
Number of extensions: 3172
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)