Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30551
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11720.1 68414.m01345 starch synthase, putative strong simila...    28   4.3  
At5g53860.1 68418.m06697 expressed protein                             27   9.9  
At1g79190.1 68414.m09233 expressed protein                             27   9.9  

>At1g11720.1 68414.m01345 starch synthase, putative strong
           similarity to soluble-starch-synthase [Solanum
           tuberosum] GI:1911166
          Length = 1025

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 5/39 (12%)
 Frame = +3

Query: 216 GAYNGDPWRPWCRR----WLLH-WIPVLLEVPEEPYVRD 317
           GA+N   W+ + RR    W+   W+  LL +P+E Y  D
Sbjct: 160 GAFNEWRWKSFTRRLEKTWIHEDWLSCLLHIPKEAYKMD 198


>At5g53860.1 68418.m06697 expressed protein
          Length = 402

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +2

Query: 62  PKLESTLLSSTTRVYSTVSPFVYKXGRYVADPGRYDPSRDNFWAVTFP 205
           P  + T++    + Y+ +    Y     V      DPS  NFW +T P
Sbjct: 169 PTCDGTIMEPPWKAYNVLKKMDYPYEHIVHS--MKDPSIANFWLITLP 214


>At1g79190.1 68414.m09233 expressed protein
          Length = 1274

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 222 YNGDPWRPWCRR 257
           YNG+ W+ WC R
Sbjct: 618 YNGEDWQSWCNR 629


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,568,992
Number of Sequences: 28952
Number of extensions: 198509
Number of successful extensions: 519
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)