Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30550
         (388 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    26   0.15 
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   2.4  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    20   9.8  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          20   9.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   9.8  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.8 bits (54), Expect = 0.15
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -1

Query: 229 AVPIPPNEVAMPSRPFSILSSSIPWSAKLEISFTCPALSLPKLSSAE-SPKLPNPESWCP 53
           A P PP E A    P  + + S P S   E    C  L   + +S E S  L  P   CP
Sbjct: 43  ASPAPPEEEAASPTPGDVPTPSSPRSIS-EDPLNCRDLPNSRCNSRESSDSLVQPR--CP 99

Query: 52  NPES 41
           + ES
Sbjct: 100 SGES 103


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 157 MV*TKIKSKRALKALPLHWAVSALPLVVPSPQ 252
           +V T++ +      LP   A S LPL+VP PQ
Sbjct: 174 LVPTRLANGDIALVLPTQGA-SPLPLLVPIPQ 204


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +2

Query: 287 CQHNLFNSLELTCC 328
           C H L   LEL  C
Sbjct: 475 CNHGLVYDLELNIC 488


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 195 LQGPFRFYLRLYHGLLNWKYPLRVRH 118
           + GP +  L  YH L   K P  V H
Sbjct: 275 MTGPQQRVLSGYHALSGLKAPPGVEH 300


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 96  LDSFGKDNAGHVKDISSLADHGIDEDK 176
           + S G D+ G   ++    D G  ED+
Sbjct: 4   VSSSGGDDLGSTDEVKVFKDEGDGEDE 30


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,067
Number of Sequences: 336
Number of extensions: 1557
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8119573
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)