Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30549
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   2.2  
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    27   2.2  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   6.7  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   6.7  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   6.7  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   8.9  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    25   8.9  

>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 277 PLFAPFVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSG 161
           P+FA  +   L LF+Q+ P + +    FW S+ L+  +G
Sbjct: 796 PIFAYVISKCLNLFMQIDPSIGVA---FWSSMVLVVAAG 831


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/20 (50%), Positives = 17/20 (85%)
 Frame = +2

Query: 431 EEKRQRLEEAEKKRQAMLQA 490
           EEKR+++EE++K  + +LQA
Sbjct: 138 EEKRRKIEESDKWHRVLLQA 157


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 194 EFIKRQDQKRSDLDEQLKEY 253
           E +KR+DQK+ D+ E L+EY
Sbjct: 272 ELLKRRDQKQQDV-EALQEY 290


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -3

Query: 88  CLLSVARVEVGHSVTRHWFLDRQH 17
           C L +  +   +++ R W L R+H
Sbjct: 80  CCLQILGIATSYTILRSWLLSRKH 103


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 95  CWLFIECRTGRSRSLSHSALVLGPAA 18
           CW  I    G S  L+  AL+L PA+
Sbjct: 292 CWWIIPMALGSSAGLACRALLLNPAS 317


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +3

Query: 249 NTSTNGANSGPRRRMSSNALKRSRPSARFLV 341
           N     A   P    SSN+ K S PS  FLV
Sbjct: 793 NIPLGHALGNPESNNSSNSFKPSHPSQSFLV 823


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 277 PLFAPFVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSGC 158
           PL +  +D + ++F+Q++   VL  +    SL +   SGC
Sbjct: 281 PLLSLSIDFYFRVFVQIKAKPVLVKNLQSQSLLIYHCSGC 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,305,933
Number of Sequences: 5004
Number of extensions: 17363
Number of successful extensions: 80
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)