Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30546
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 52 4e-08
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 48 6e-07
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 43 2e-05
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 43 3e-05
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 42 4e-05
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 42 5e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 40 2e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 40 2e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 2e-04
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 40 2e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 4e-04
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 38 9e-04
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 37 0.002
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 36 0.003
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 36 0.005
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 35 0.006
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 31 0.007
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 34 0.011
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 32 0.044
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 31 0.14
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.14
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 31 0.14
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 30 0.18
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 30 0.18
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 29 0.55
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 0.95
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po... 28 0.95
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 28 0.95
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 28 0.95
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 27 1.3
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 27 1.3
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 27 1.7
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 26 2.9
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 2.9
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 2.9
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 25 5.1
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 25 5.1
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 5.1
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 25 6.7
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 25 6.7
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc... 25 6.7
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 52.4 bits (120), Expect = 4e-08
Identities = 18/72 (25%), Positives = 41/72 (56%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 402
++F+G + + T D+ F+ YG +++C ++ +GFV +E+ + R+ + + G+ G
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGKEFMG 64
Query: 403 QAIKIEAAKSRK 438
I +E A+ +
Sbjct: 65 SRIVVEPARGER 76
Score = 41.5 bits (93), Expect = 7e-05
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Frame = +1
Query: 190 SESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY---GFVHMENEQVG 360
S+ P F++ + NLS+ + DL+ + K G D R G V E+
Sbjct: 88 SKYPRPRRTGFRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDM 147
Query: 361 REAIQNLNGELVHGQAIKIEA---AKSRKAPSTPT 456
R A+ +LNGE++ GQA+ + A + P P+
Sbjct: 148 RNALTSLNGEVIKGQAVTLREDPDAANEPLPEVPS 182
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 48.4 bits (110), Expect = 6e-07
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 381
+F+ ++ + E +L+ +F K+GTV I+R +GF+ + AI NL
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162
Query: 382 NGELVHGQAIKIEAAKSRKAPSTPTTKIFVG 474
N + +G+ + ++ AK R P +PT ++G
Sbjct: 163 NSQEFYGRVLNVQKAK-RSRPHSPTPGKYMG 192
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 43.2 bits (97), Expect = 2e-05
Identities = 25/113 (22%), Positives = 49/113 (43%), Gaps = 8/113 (7%)
Frame = +1
Query: 187 VSESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHM 342
+++ T +F+G LS + L FE+YGT+V ++ + YG+V
Sbjct: 252 ITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDF 311
Query: 343 ENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAP 501
E + + A+ + + G+ + ++ + R A P + GN D+ P
Sbjct: 312 ETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEP 364
Score = 29.1 bits (62), Expect = 0.41
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDI--------VRNYGFVHMENEQVGREAIQNL 381
+F+GNLS TE DL F G + + ++ +G+V + ++ ++ +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-M 426
Query: 382 NGELVHGQAIKIEAAKSR 435
NG + G+ +++ + R
Sbjct: 427 NGHFIAGRPCRLDFSTPR 444
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 42.7 bits (96), Expect = 3e-05
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Frame = +1
Query: 214 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAI 372
GT +FI NL L F +G ++ C + + YGFVH ++ + AI
Sbjct: 166 GTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAI 225
Query: 373 QNLNGELVHGQAIKIEAAKSRK 438
+++NG L++ + + + SR+
Sbjct: 226 EHVNGMLLNDKKVYVGHHVSRR 247
Score = 38.3 bits (85), Expect = 7e-04
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 381
+++G L TEA L LF G V + R+ Y +V+ N + G +A+ L
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 382 NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEV 507
N L+ G+ +I S++ PS K+ GN+ K P +
Sbjct: 142 NYTLIKGRPCRI--MWSQRDPS--LRKMGTGNVFIKNLDPAI 179
Score = 33.5 bits (73), Expect = 0.019
Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 384
+FI NL D+ + L+ F +GT+ I+ + +GFV + +A+ +N
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
Query: 385 GELVHGQAIKIEAAKSRK 438
++ G+ + + A+ ++
Sbjct: 426 QRMLAGKPLYVALAQRKE 443
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 42.3 bits (95), Expect = 4e-05
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 378
K+FIG L+ +TT+ LR FE++G V++C ++R+ +GF+ +N + E +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 379 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVR 510
+ + G+ I + A R+ T K+FVG + E R
Sbjct: 224 EHH--LDGKIIDPKRAIPRE-EQEKTAKMFVGGVPGDCTEEEFR 264
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 41.9 bits (94), Expect = 5e-05
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +1
Query: 223 KIFIGNLSDKT-TEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVH 399
++F+G+L+ K+ ++ +L +F+ YG + + + NYGFV + A+ G V
Sbjct: 364 RLFLGHLNTKSLSKRNLWKVFKIYGPLAQIVLKANYGFVQFFTNEDCARALNAEQGNFVR 423
Query: 400 GQAIKIEAAKSRK 438
GQ + +E +K +K
Sbjct: 424 GQKLHLEISKIQK 436
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 40.3 bits (90), Expect = 2e-04
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 8/85 (9%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 384
I++GNL T++ +L LF G+V+ I + +G V ENE +I+ LN
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 341
Query: 385 GELVHGQAIKIEAAK-SRKAPSTPT 456
G G+ +++ A + P+ PT
Sbjct: 342 GYRYGGRPLQLSYAHYATPLPAVPT 366
Score = 29.5 bits (63), Expect = 0.31
Identities = 16/80 (20%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNL 381
++++GNLS + +L+ + G V+ C+I+ + + + R AI+ L
Sbjct: 67 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 126
Query: 382 NGELVHGQAIKIEAAKSRKA 441
+ + G+ + I + + A
Sbjct: 127 SNQKFMGRLVYIREDREQNA 146
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 40.3 bits (90), Expect = 2e-04
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Frame = +1
Query: 220 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQN 378
F++F+GNL + + L F +Y ++V+ +VR+ +GFV ++ +A +
Sbjct: 30 FRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWRE 89
Query: 379 LNGELVHGQAIKIEAAKSRKAPSTPTTK 462
NG+ + + +K+ A S P+ K
Sbjct: 90 KNGKYIGSRPVKLSRATSDVKPNEVNEK 117
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 40.3 bits (90), Expect = 2e-04
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +1
Query: 211 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLN 384
T +F+G LS +E +L+ LF+ +G +V I + GFV N Q AI L
Sbjct: 300 TANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQ 359
Query: 385 GELVHGQAIKIEAAKSRKAPSTP 453
G + I++ +++ + P
Sbjct: 360 GYPLGNSRIRLSWGRNQNPIAAP 382
Score = 35.5 bits (78), Expect = 0.005
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Frame = +1
Query: 193 ESKMPGTGTFKIFIGNLSDKTTEADLRPLFE---------KYGTVVECDIVRNYGFVHME 345
E + + IF+G+LS E D+ LF K T + ++ R YGFV
Sbjct: 177 EKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFT 236
Query: 346 NEQVGREAIQNLNGELVHGQAIKIEAA 426
+E + A+ + G++ + I++ A
Sbjct: 237 DENDQKSALAEMQGQICGDRPIRVGLA 263
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 39.9 bits (89), Expect = 2e-04
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 12/82 (14%)
Frame = +1
Query: 220 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDI----VR--------NYGFVHMENEQVGR 363
F++F+G LS T ++++R LFE GTV + I VR FV N++
Sbjct: 44 FRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVD 103
Query: 364 EAIQNLNGELVHGQAIKIEAAK 429
+AI+ LNG+ + + I ++ A+
Sbjct: 104 KAIETLNGKTLDDREIVVQKAR 125
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 319 RNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRK 438
R +GFV N + AI+ +NG+ V + +++A R+
Sbjct: 258 RGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRE 297
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 39.1 bits (87), Expect = 4e-04
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Frame = +1
Query: 220 FKIFIGNLSDKTTEADLRPLFEK-YGTVVECDIV--------RNYGFVHMENEQVGREAI 372
F IF+G+L T ++DL F Y + I+ R YGFV +E+ + A+
Sbjct: 182 FSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHAL 241
Query: 373 QNLNGELVHGQAIKIEAAKSRKAPS 447
++ G L G+ ++I A + S
Sbjct: 242 MHMQGYLCQGRPLRISVASPKSRAS 266
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 37.9 bits (84), Expect = 9e-04
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNL 381
+F+GNL + TE ++R E +G + + IV RN FVH N +A+Q L
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFVHFLNIAAAIKAVQEL 261
Score = 26.2 bits (55), Expect = 2.9
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +1
Query: 208 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR--NYGFVHMENEQVGREAIQNL 381
G + I+IGN D T L+ FE++G + + R N FV+ + AI +
Sbjct: 410 GGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINAIDRI 469
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 36.7 bits (81), Expect = 0.002
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 381
+F+ NL+ +T + DL F G + +V N YGFV + + A + L
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 382 NGELVHGQAIKIEAAKSRKAPSTPT 456
+ +HG+ ++++ A RK T
Sbjct: 67 KNKKLHGRILRLDFATPRKRSEVDT 91
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 36.3 bits (80), Expect = 0.003
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVV-------ECDIVRNYGFVHMENEQVGREAIQNLN 384
+ +GNL+ TE+ L F +G ++ E + R+Y FV + + +EA++N+N
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMN 67
Query: 385 GELVHGQAIKIEAA 426
++ + I++ A
Sbjct: 68 YSILCDRCIRVSPA 81
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 35.5 bits (78), Expect = 0.005
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 381
+F+ LS T E+D+ F +YG + +VRN Y FV E E+ + A +
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKAS 161
Query: 382 NGELVHGQAIKIEAAKSR 435
G +++G+ I ++ + R
Sbjct: 162 AGLMLNGRRIVVDVERGR 179
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 35.1 bits (77), Expect = 0.006
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 10/106 (9%)
Frame = +1
Query: 181 VCVSESKMPGTGTFKIFIGNLSDKTT--EADLRPLFEKYGTVVEC--------DIVRNYG 330
V + + P +F+ NL D L LF K+G + C +I + YG
Sbjct: 406 VTPTPTSTPTIDPCNLFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYG 465
Query: 331 FVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIF 468
FV + +AI LNG L + + + A+ R+ + IF
Sbjct: 466 FVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKREDRKKRLSAIF 511
Score = 33.5 bits (73), Expect = 0.019
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------------YGFVHMENEQVGRE 366
I++GNL +DL LFE +G + ++ + F+ EN+
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTDSKSPTLFAFITFENKCSADN 81
Query: 367 AIQNLNGELVHGQAIKIE 420
AI +LNG G +K+E
Sbjct: 82 AIASLNGSSFQGNTLKVE 99
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 31.5 bits (68), Expect(2) = 0.007
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLN 384
+FIGNL E ++ F K+G + I+ +N FVH N + + ++ L+
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDAIKVVRTLS 355
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--YGFVHMENEQVGREAIQNL 381
++ ++SD T +L + +YG + ++N GFV N +A+ L
Sbjct: 502 VYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAVNGL 555
Score = 22.2 bits (45), Expect(2) = 0.007
Identities = 8/33 (24%), Positives = 18/33 (54%)
Frame = +1
Query: 418 EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVREL 516
+ + +++ +F+GNL KT+ E+ +L
Sbjct: 396 DRCRQQESKDNGNRTVFLGNLHTKTKGHEICDL 428
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 34.3 bits (75), Expect = 0.011
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNG 387
+FI NLS K T ++ LF +YG V + + R FV EN Q R A + L+G
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSG 72
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 32.3 bits (70), Expect = 0.044
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +1
Query: 205 PGTGTFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQVGRE 366
P + IF+G L T L LF KYG V++C I+ + F+ +++Q
Sbjct: 360 PPIDPYSIFVGQLDPVNCTHYLLVDLFSKYGKVIDCKIIHQSKKPAFAFLRFDSQQAAYA 419
Query: 367 AI 372
A+
Sbjct: 420 AV 421
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.7 bits (66), Expect = 0.14
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--GFVHMENEQVGREA 369
+F+G ++ E LR +FE++G+V + NY GF+ M +A
Sbjct: 408 LFLGGITRSVREPVLRSMFERFGSVQSLILNHNYRHGFLKMFRRDAAEKA 457
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 30.7 bits (66), Expect = 0.14
Identities = 13/62 (20%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +1
Query: 217 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGE 390
T +++GNL + + F YGTV ++ ++ F++ ++ + + ++ LNG+
Sbjct: 586 THALWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEELNGK 645
Query: 391 LV 396
+
Sbjct: 646 RI 647
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 30.7 bits (66), Expect = 0.14
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRP----LFEKYGTVVE-----CDIVRNYGFVHMENEQVGREAIQN 378
+++ NL+DK + DLR LF YGTVV+ +R V + A++
Sbjct: 6 LYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKA 65
Query: 379 LNGELVHGQAIKIEAAKSR 435
L + G+ +KI+ A S+
Sbjct: 66 LKNFIFFGKEMKIQYAHSK 84
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 30.3 bits (65), Expect = 0.18
Identities = 14/72 (19%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNL 381
++ + N+ T+ D++ +FE +G + + R+ +G++ N R A++ +
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKM 400
Query: 382 NGELVHGQAIKI 417
NG + G+ +++
Sbjct: 401 NGFDLAGRNMRV 412
Score = 27.9 bits (59), Expect = 0.95
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 381
+F+ L+++ T +L FE+ G V + IVR+ +V +E + AI L
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA-L 300
Query: 382 NGELVHGQAIKI---EAAKSRKA 441
+G+ + G + + EA K+RKA
Sbjct: 301 SGKRLLGLPVIVQLTEAEKNRKA 323
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 30.3 bits (65), Expect = 0.18
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Frame = +1
Query: 220 FKIFIGNLSDKTTEADLRPLFEKY----GTVVEC--DIVRNYGFVHMENEQVGREAIQNL 381
+ +FI N+ + +E D++ LF++Y V+ C + F+ + NE + A +
Sbjct: 73 YMLFISNIDPEVSENDIKYLFQRYNFISARVLRCVDGTSTSIAFIWLANESDIQNAQVEM 132
Query: 382 NGELVHGQAIKIEAAKSRK 438
G ++I + + KS K
Sbjct: 133 QGAFCLKRSILVHSVKSDK 151
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 28.7 bits (61), Expect = 0.55
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTV 300
+F+GNL +TT+ADL+ F + G +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQI 254
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.9 bits (59), Expect = 0.95
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Frame = +1
Query: 226 IFIGNLSDK--TTEADLRPLFEKYGTVVE----C----DIVRNYGFVHMENEQVGREAIQ 375
+++ NL D T ++ L LF +G+++ C I + YGFV + A
Sbjct: 384 LYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKD 443
Query: 376 NLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGN 477
LNG +V + I + A+ RK+ + F N
Sbjct: 444 TLNGMMVGKKRIFVCFAE-RKSDRIRRLQAFFAN 476
Score = 24.6 bits (51), Expect = 8.9
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTV 300
I++GN+ + ++ ++ F KYG V
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQV 43
>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 562
Score = 27.9 bits (59), Expect = 0.95
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 22 YLVFIFLTCVIYCYSLYIVTHVSIISNFIYPVYSLIF 132
YL+ FLTCV+ Y + + +S SNF V SL +
Sbjct: 164 YLLLTFLTCVVIAYLRFALRTMS-FSNFKELVISLTY 199
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 27.9 bits (59), Expect = 0.95
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN------YGFVHME-NEQVGREAIQNLN 384
+F+GNL+ + E L F G++ IVR+ GF +++ + +G + LN
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 385 -GELVHGQAIKIEAAKSRKAPSTPTTK 462
++ G+ ++I AKS K S +K
Sbjct: 332 EKKMPEGRTLRIMRAKSTKPKSITRSK 358
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 27.9 bits (59), Expect = 0.95
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 381
+F+GN+ +E + +F + G V +V + YGF + + A++ L
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 382 NGELVHGQAIKIE 420
N + + I++E
Sbjct: 69 NNSELGPRKIRVE 81
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 324
++F+ N+S T LR F+ +G V + D+ N
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLN 128
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTV 300
+++GNLS TTE + LF K G +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEI 58
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = +2
Query: 203 CRAPVLSKSSSGTFLIKPQKPILDRYSKNTVRS*NAISSEITVSCTWKTNKSAAKP 370
CR+ VL T I ILD SK +V +A+S +T+ C K S P
Sbjct: 236 CRSCVLIVGQRSTNSILLVYQILDGLSKKSVDYTDAVSLRMTLICLQKLEPSEHDP 291
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 167 SFREMYAFQNLKCRAPVLSKSSSGT 241
S E Y+F NLK A +LSK++S +
Sbjct: 149 SISEKYSFCNLKTSALILSKAASAS 173
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 26.2 bits (55), Expect = 2.9
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 381
+++GN+ + E + +F++ G V +V + YGF + A++NL
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNL 66
Query: 382 N 384
N
Sbjct: 67 N 67
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 26.2 bits (55), Expect = 2.9
Identities = 15/64 (23%), Positives = 25/64 (39%)
Frame = +1
Query: 274 PLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTP 453
P F Y + D V ++ + G I NG +H ++ E K ++
Sbjct: 45 PTFSPYAVIKNFDEVNRMYYIQVVGNLSGVITIVGGNGSHIHAASVYSETYALGKLVTSN 104
Query: 454 TTKI 465
TTK+
Sbjct: 105 TTKL 108
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.4 bits (53), Expect = 5.1
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Frame = +1
Query: 325 YGFVHMENEQVGREAIQNLNGELVHGQAIKIE--------AAKSRKAPSTPT--TKIFVG 474
+GFV +++ A+ +NG ++ G ++I+ AA+ RK S+ TKI +
Sbjct: 667 FGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGTKILIK 726
Query: 475 NLTDKTRAPEVREL 516
NL + +V+ L
Sbjct: 727 NLPFEATKKDVQSL 740
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +1
Query: 373 QNLNGELVHGQAIKIEAAKSRKAPSTPTTK 462
QNL LV GQ IK K + S TTK
Sbjct: 17 QNLTDGLVGGQRIKAPNKKKNRKASKNTTK 46
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 75 SNPCKYYFKFHLSRVLVNILGKIPSLQTLLTHFVKCMRFR 194
S+ C F L + I K+P +LT F K +RFR
Sbjct: 771 SSTCTINFPLALWDSRLRIETKVPLNDAILTEFSKSIRFR 810
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 6.7
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +2
Query: 116 CTR*YSRKNTIASDAADSFREMYAFQNLKCRAPVLSKSSSGTFLIKPQKPILDRY-SKNT 292
CT + R+N S D+FR++Y L+++ +F + +KP +++ SKN+
Sbjct: 53 CTLEFVRQNADLSITKDNFRDVY---------KKLTENEDDSFANQAEKPSMEQQNSKNS 103
Query: 293 VRS*NAISSEITVSCTWKTNKSAAKP 370
++ ++E +V+ + S A P
Sbjct: 104 IKE---DANEHSVNSAHSKSSSNASP 126
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 194 NLKCR-APVLSKSSSGTFLIKPQKPILD 274
+L+C+ +PV+ +S +F K + PILD
Sbjct: 211 HLRCKTSPVIEESKEISFSYKDEHPILD 238
>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 6.7
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +2
Query: 89 VLFQISFIPCTR*YSRKNTIASDAADSFREMYAFQNLKCRAPVLSKSSSGTFLIKPQKPI 268
+L+ + IP + S+ + A SF Y + L +L+ SSS L +P+K
Sbjct: 167 LLYGATHIPVGKDQSQHVELTRSIARSFNSSYKEKILTVPDIILNSSSSIMALCQPEK-- 224
Query: 269 LDRYSKNTVRS*NAI 313
+ SK+ + S N I
Sbjct: 225 --KMSKSDINSKNYI 237
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,480
Number of Sequences: 5004
Number of extensions: 42954
Number of successful extensions: 183
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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