Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30546
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 56 2e-08
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 52 2e-07
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 52 2e-07
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 52 2e-07
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 52 2e-07
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 52 2e-07
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 52 2e-07
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 52 2e-07
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 52 3e-07
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 51 4e-07
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 51 4e-07
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 51 5e-07
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 51 5e-07
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 50 9e-07
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 50 1e-06
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 50 1e-06
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 50 1e-06
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 49 2e-06
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 49 2e-06
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 49 2e-06
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 49 2e-06
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 49 2e-06
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 49 2e-06
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 48 3e-06
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 48 3e-06
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 48 3e-06
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 48 5e-06
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 48 5e-06
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 47 7e-06
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 47 7e-06
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 47 9e-06
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 46 1e-05
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 46 2e-05
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 46 2e-05
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 46 2e-05
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 46 2e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 46 2e-05
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 45 3e-05
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 45 3e-05
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 45 3e-05
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 45 3e-05
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 45 3e-05
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 45 3e-05
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 45 3e-05
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 44 5e-05
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 44 5e-05
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 44 5e-05
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 44 6e-05
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ... 44 6e-05
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 44 6e-05
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 44 6e-05
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 44 6e-05
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 44 8e-05
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 44 8e-05
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 44 8e-05
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 44 8e-05
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 44 8e-05
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 43 1e-04
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 43 1e-04
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 43 1e-04
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 42 2e-04
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 42 2e-04
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 42 2e-04
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 42 2e-04
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 42 2e-04
At4g10610.1 68417.m01735 RNA-binding protein, putative 42 2e-04
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 42 2e-04
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 42 2e-04
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 42 3e-04
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 42 3e-04
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 42 3e-04
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 42 3e-04
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 42 3e-04
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 42 3e-04
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 42 3e-04
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 41 4e-04
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 41 4e-04
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 41 4e-04
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 41 4e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 41 6e-04
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 41 6e-04
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 41 6e-04
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 40 8e-04
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 40 0.001
At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RS... 40 0.001
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 39 0.002
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 39 0.002
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 38 0.003
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 38 0.003
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 38 0.004
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 38 0.004
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 38 0.004
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 38 0.004
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 38 0.005
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 38 0.005
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 37 0.007
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 37 0.007
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 37 0.007
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 37 0.009
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 37 0.009
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 37 0.009
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 37 0.009
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 36 0.012
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 36 0.016
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 36 0.016
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 36 0.016
At5g51300.2 68418.m06360 splicing factor-related contains simila... 36 0.016
At5g51300.1 68418.m06359 splicing factor-related contains simila... 36 0.016
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 36 0.016
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 36 0.016
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 36 0.021
At2g47310.1 68415.m05906 flowering time control protein-related ... 36 0.021
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 36 0.021
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 35 0.028
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 35 0.028
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 35 0.028
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 35 0.028
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 35 0.037
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 35 0.037
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 35 0.037
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 35 0.037
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 34 0.049
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 34 0.049
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 34 0.065
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 34 0.065
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 34 0.065
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 34 0.065
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 34 0.065
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 34 0.065
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 33 0.086
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 33 0.086
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 33 0.086
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 33 0.086
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 33 0.086
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 33 0.11
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 33 0.11
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 32 0.20
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 32 0.26
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 31 0.35
At1g43190.1 68414.m04977 polypyrimidine tract-binding protein, p... 31 0.46
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 31 0.61
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 30 0.80
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 30 0.80
At5g49000.1 68418.m06062 kelch repeat-containing F-box family pr... 30 1.1
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 30 1.1
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 30 1.1
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 1.4
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 29 1.4
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 29 1.9
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 29 1.9
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 29 2.5
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 29 2.5
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 29 2.5
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 29 2.5
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 29 2.5
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 29 2.5
At4g39550.1 68417.m05592 kelch repeat-containing F-box family pr... 28 3.2
At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT... 28 3.2
At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing ... 28 4.3
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 28 4.3
At1g67140.1 68414.m07638 expressed protein 28 4.3
At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing ... 28 4.3
At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing ... 28 4.3
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 28 4.3
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 27 5.7
At5g14690.1 68418.m01721 expressed protein predicted protein, Ar... 27 5.7
At1g59740.1 68414.m06726 proton-dependent oligopeptide transport... 27 5.7
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 27 7.5
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR... 27 7.5
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 27 7.5
At1g55290.1 68414.m06316 oxidoreductase, 2OG-Fe(II) oxygenase fa... 27 7.5
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 27 9.9
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 27 9.9
At1g73660.1 68414.m08530 protein kinase family protein contains ... 27 9.9
At1g52030.2 68414.m05870 myrosinase-binding protein, putative (F... 27 9.9
At1g52030.1 68414.m05869 myrosinase-binding protein, putative (F... 27 9.9
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 55.6 bits (128), Expect = 2e-08
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Frame = +1
Query: 214 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAI 372
G +F+ NL + T A L+ +F+K+G +V C + R YGFV E E AI
Sbjct: 110 GVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAI 169
Query: 373 QNLNGELVHGQAI---KIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 513
Q LN +V + I K R P T +++ NL +RE
Sbjct: 170 QTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLRE 219
Score = 37.1 bits (82), Expect = 0.007
Identities = 17/78 (21%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 384
I++ N++ TE +LR F + GT+ ++ + +GFV + +A++ +
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 385 GELVHGQAIKIEAAKSRK 438
G++ HG+ + + A+ ++
Sbjct: 366 GQMFHGKPLYVAIAQKKE 383
Score = 32.3 bits (70), Expect = 0.20
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 384
+++ NL +E LR F ++G +V I R Y FV+ +N + R A + +N
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 385 GELVHGQAIKIEAAKSR 435
G + + + A+ +
Sbjct: 263 GTKFGSKCLYVGRAQKK 279
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/77 (36%), Positives = 42/77 (54%)
Frame = +1
Query: 214 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 393
G ++++G LS +T DL LF +YG V + D+ R+Y FV + + +A L+G
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRD 68
Query: 394 VHGQAIKIEAAKSRKAP 444
G I +EA SR AP
Sbjct: 69 FDGSRITVEA--SRGAP 83
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Frame = +1
Query: 193 ESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN 348
+S+ P T K+FI LS T+E LR FE +G +VE I+ + Y F+
Sbjct: 273 DSESPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTT 332
Query: 349 EQVGREAIQNLNGELVHGQAIKIEAAKSR 435
E+ A++ +NG++++G I ++ AK++
Sbjct: 333 EEAAGTALKEMNGKIINGWMIVVDVAKTK 361
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 52.0 bits (119), Expect = 2e-07
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Frame = +1
Query: 220 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 375
++ F+G L+ T + DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 376 NLNGELVHGQAIKIEAAKSR 435
+NG+ + G+ I + A+SR
Sbjct: 66 EMNGKELDGRVITVNEAQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 52.0 bits (119), Expect = 2e-07
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Frame = +1
Query: 220 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 375
++ F+G L+ T + DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 376 NLNGELVHGQAIKIEAAKSR 435
+NG+ + G+ I + A+SR
Sbjct: 66 EMNGKELDGRVITVNEAQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 52.0 bits (119), Expect = 2e-07
Identities = 25/80 (31%), Positives = 48/80 (60%), Gaps = 8/80 (10%)
Frame = +1
Query: 220 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 375
++ F+G L+ T + DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 376 NLNGELVHGQAIKIEAAKSR 435
+NG+ + G+ I + A+SR
Sbjct: 66 EMNGKELDGRVITVNEAQSR 85
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 52.0 bits (119), Expect = 2e-07
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 393
++ GN+ + TE L+ +F G + C ++R +YGFVH + + AI LNG
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRH 124
Query: 394 VHGQAIKIE--AAKSRKAPSTPTTKIFVGNLT 483
+ GQ +K+ A ++ ++ IFVG+L+
Sbjct: 125 IFGQPMKVNWAYATGQREDTSSHFNIFVGDLS 156
Score = 33.1 bits (72), Expect = 0.11
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Frame = +1
Query: 220 FKIFIGNLSDKTTEADLRPLFEKYGTVV----ECDIV--------RNYGFVHMENEQVGR 363
F IF+G+LS + T+A L F + + + ++ R +GFV N+Q +
Sbjct: 148 FNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQ 207
Query: 364 EAIQNLNGELVHGQAIK 414
AI +NG+ V + I+
Sbjct: 208 TAINEMNGKWVSSRQIR 224
Score = 30.7 bits (66), Expect = 0.61
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKY--GTVVECDIVRN--YGFVHMENEQVGREAIQNLNGE 390
+++GNLS + T+ DL LF G + E + R+ +GFV AIQ N +
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQ 333
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 52.0 bits (119), Expect = 2e-07
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 393
++ GN+ + TE L+ +F G + C ++R +YGFVH + + AI LNG
Sbjct: 65 VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRH 124
Query: 394 VHGQAIKIE--AAKSRKAPSTPTTKIFVGNLT 483
+ GQ +K+ A ++ ++ IFVG+L+
Sbjct: 125 IFGQPMKVNWAYATGQREDTSSHFNIFVGDLS 156
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +1
Query: 220 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 375
F IF+G+LS + T+A L F + + + ++ R +GFV N+Q + AI
Sbjct: 148 FNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 207
Query: 376 NLNGELVHGQAIK 414
+NG+ V + I+
Sbjct: 208 EMNGKWVSSRQIR 220
Score = 30.7 bits (66), Expect = 0.61
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKY--GTVVECDIVRN--YGFVHMENEQVGREAIQNLNGE 390
+++GNLS + T+ DL LF G + E + R+ +GFV AIQ N +
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQMGNAQ 329
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 51.6 bits (118), Expect = 3e-07
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
K+++ LS +TTE LR FE++G ++ ++V + + F+ E E+ +AIQ
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQG 137
Query: 379 LNGELVHGQAIKIEAAKSR 435
++G+ + G+ I +E AK+R
Sbjct: 138 MHGKFLDGRVIFVEEAKTR 156
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 51.2 bits (117), Expect = 4e-07
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Frame = +1
Query: 220 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 375
F+I++GNL L LF ++G VV+ +V R +GFV M NE AI
Sbjct: 207 FRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIA 266
Query: 376 NLNGELVHGQAIKIEAAKSR 435
L+G+ + G+AIK+ A+ R
Sbjct: 267 ALDGQNLEGRAIKVNVAEER 286
Score = 39.1 bits (87), Expect = 0.002
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 15/101 (14%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
K+F+GNL L LFE+ GTV +++ R +GFV M + +A++
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 379 LNGELVHGQAIKIEAAKSR-----KAPST--PTTKIFVGNL 480
N V+G+ + + A R + P +I+VGNL
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNL 214
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 51.2 bits (117), Expect = 4e-07
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 393
+++GN+ + TE L+ +F G V C ++R +YGFVH + + AI +LNG
Sbjct: 56 VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRH 115
Query: 394 VHGQAIKIE--AAKSRKAPSTPTTKIFVGNLT 483
+ GQ IK+ A ++ ++ IFVG+L+
Sbjct: 116 LFGQPIKVNWAYASGQREDTSSHFNIFVGDLS 147
Score = 37.9 bits (84), Expect = 0.004
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Frame = +1
Query: 220 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 375
F IF+G+LS + T+A L F Y T + ++ R +GFV N+Q + AI
Sbjct: 139 FNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAID 198
Query: 376 NLNGELVHGQAIK 414
+ G+ + + I+
Sbjct: 199 EITGKWLGSRQIR 211
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 50.8 bits (116), Expect = 5e-07
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
K+FIG ++ E LR F KYG VV+ ++ R +GFV + + AIQ
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 379 LNGELVHGQAIKIEAAKSR 435
L+G +HG+ +K+ A R
Sbjct: 101 LDGRDLHGRVVKVNYANDR 119
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 50.8 bits (116), Expect = 5e-07
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL--VH 399
+F+GN +T ++DL LF+KYG V D+ Y FV+ E+E+ +AI+ L+
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYE 63
Query: 400 GQAIKIEAAKSR--------KAPST--PTTKIFVGNLTDKTRAPE 504
+ + +E AK KAPS PT +FV N D R E
Sbjct: 64 KRRLSVEWAKGERGRPRGDAKAPSNLKPTKTLFVINF-DPIRTKE 107
Score = 37.5 bits (83), Expect = 0.005
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 217 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 393
T +F+ N +T E D+ FE YG V I RN+ FV E ++ +A++
Sbjct: 92 TKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSK 151
Query: 394 VHGQAIKIEAA 426
+ + + +E A
Sbjct: 152 ILDRVVSVEYA 162
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 50.0 bits (114), Expect = 9e-07
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Frame = +1
Query: 241 LSDKTTEADLRPLFEKYGTVV---ECDIVRNYGFVHMENEQVGREAIQNLNGELVHGQAI 411
LS TT+ LR LF + ++ + + +GF+ E+E ++A++ LNG++V+G+ I
Sbjct: 78 LSAYTTDQSLRQLFAPFARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLI 137
Query: 412 KIEAAKSRKAPST 450
+E AK +AP+T
Sbjct: 138 FVETAKEVEAPTT 150
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 49.6 bits (113), Expect = 1e-06
Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 16/113 (14%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYG--FVHMENEQVGREAIQNL 381
++ N+ +T D+R LFEKYG+V++ ++ RN G F+ M + + A+++L
Sbjct: 95 RLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSL 154
Query: 382 NGELVHGQAIKIEAAKSRK--------APS-TPTTKIFVGNLTDKTRAPEVRE 513
G+ +K++ AK++K PS PT +FV NL + RA ++E
Sbjct: 155 ESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKE 207
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 49.6 bits (113), Expect = 1e-06
Identities = 27/77 (35%), Positives = 41/77 (53%)
Frame = +1
Query: 214 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 393
G ++++G LS +T DL LF +YG V + D+ R+Y FV + + +A L+G
Sbjct: 9 GNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRD 68
Query: 394 VHGQAIKIEAAKSRKAP 444
G I +E SR AP
Sbjct: 69 FDGSRITVEF--SRGAP 83
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 49.6 bits (113), Expect = 1e-06
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Frame = +1
Query: 211 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREA 369
+G IFI NL L F +GT++ C + + YGFV E E+ + A
Sbjct: 133 SGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAA 192
Query: 370 IQNLNGELVHGQAIKI-------EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 513
I LNG L++ + + + E A+ P+ T ++V NL + E+R+
Sbjct: 193 IDKLNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRK 247
Score = 38.3 bits (85), Expect = 0.003
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 384
+++ NL D + L+ +F +YG V ++ R +GFV N + A+ +N
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 385 GELVHGQAIKIEAAKSRK 438
G+++ + + I A+ ++
Sbjct: 394 GKMIGRKPLYIALAQRKE 411
Score = 33.5 bits (73), Expect = 0.086
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 384
+++ NL + E +LR F K+G + ++R+ +GFV+ E + A++ +N
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Query: 385 G 387
G
Sbjct: 291 G 291
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 49.2 bits (112), Expect = 2e-06
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
K+FIG LS TTE L F K G VVE IV + +GFV + ++A+
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 379 LNGELVHGQAIKIEAAKSRKA 441
NG+ ++G+ I ++ AK++++
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQS 115
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVR----NYGFVHMENEQVGREAIQNLNGEL 393
+++GN+ + TE L+ +F G V ++R +YGFVH + + AI +LNG
Sbjct: 61 VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRH 120
Query: 394 VHGQAIKIE--AAKSRKAPSTPTTKIFVGNLT 483
+ GQ IK+ A ++ ++ IFVG+L+
Sbjct: 121 LFGQPIKVNWAYATGQREDTSSHFNIFVGDLS 152
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +1
Query: 220 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 375
F IF+G+LS + T+A L F + + + ++ R +GFV N+Q + AI
Sbjct: 144 FNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIN 203
Query: 376 NLNGELVHGQAIK 414
+NG+ + + I+
Sbjct: 204 EMNGKWLSSRQIR 216
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +1
Query: 208 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 363
G ++ F+G L+ T + L F +YG V++ I+ R +GFV ++E+ +
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
Query: 364 EAIQNLNGELVHGQAIKIEAAKSR 435
+AI+ +NG+ + G++I + A+SR
Sbjct: 64 DAIEGMNGQDLDGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +1
Query: 208 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 363
G ++ F+G L+ T + L F +YG V++ I+ R +GFV ++E+ +
Sbjct: 4 GDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMK 63
Query: 364 EAIQNLNGELVHGQAIKIEAAKSR 435
+AI+ +NG+ + G++I + A+SR
Sbjct: 64 DAIEGMNGQDLDGRSITVNEAQSR 87
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 49.2 bits (112), Expect = 2e-06
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Frame = +1
Query: 214 GTFKIFIGNLSDKTTEADLRPLFEKYGTVV-------ECDIVRNYGFVHMENEQVGREAI 372
G ++++GNL +E DLR +FE +G+V E + + +GFV + R A+
Sbjct: 283 GARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNAL 342
Query: 373 QNLNGEL-VHGQAIKIEAAKSR-KAPSTPTTKIFVGNLTD 486
NLNG+L + G+AIK+ A + + P T+ G+L D
Sbjct: 343 -NLNGQLEIAGRAIKVSAVTDQTEVPEAGQTQT-TGDLDD 380
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 48.8 bits (111), Expect = 2e-06
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Frame = +1
Query: 193 ESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENE 351
+S +G +F+ NL L F GT+V C + R YGFV + E
Sbjct: 125 DSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTE 184
Query: 352 QVGREAIQNLNGELVHGQAIKI-----EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVR 510
+ AI+ LNG++++ + I + + + A T ++V NL++ T E++
Sbjct: 185 DSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELK 242
Score = 43.2 bits (97), Expect = 1e-04
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 384
+++ NL D T+ LR LF ++GT+ C ++R+ GFV + +N
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMN 389
Query: 385 GELVHGQAIKIEAAKSRK 438
G++V G+ + + A+ ++
Sbjct: 390 GKMVGGKPLYVALAQRKE 407
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 7/62 (11%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 384
+++ NLS+ TT+ +L+ F +YG++ ++R+ +GFV+ EN + A++ LN
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 385 GE 390
G+
Sbjct: 287 GK 288
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 48.4 bits (110), Expect = 3e-06
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Frame = +1
Query: 217 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 372
T+ + + N++ +TT DL PLF KYG VV+ I R+ + FV + + +A+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 373 QNLNGELVHGQAIKIEAAK 429
+ L+G +V G+ I ++ AK
Sbjct: 75 ERLDGRVVDGREITVQFAK 93
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 48.4 bits (110), Expect = 3e-06
Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Frame = +1
Query: 217 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 372
T+ + + N++ +TT DL PLF KYG VV+ I R+ + FV + + +A+
Sbjct: 15 TYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAV 74
Query: 373 QNLNGELVHGQAIKIEAAK 429
+ L+G +V G+ I ++ AK
Sbjct: 75 ERLDGRVVDGREITVQFAK 93
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 48.4 bits (110), Expect = 3e-06
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Frame = +1
Query: 220 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 375
F++++GNL L LF ++G VVE +V R +GFV M + EAI
Sbjct: 244 FRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAIS 303
Query: 376 NLNGELVHGQAIKIEAAKSR 435
L+G+ + G+AI++ A+ R
Sbjct: 304 ALDGQNLEGRAIRVNVAEER 323
Score = 42.3 bits (95), Expect = 2e-04
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 15/101 (14%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVV--------ECDIVRNYGFVHMENEQVGREAIQN 378
K+F+GNL+ L LFE+ GTV E D R +GFV M + A++
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 379 LNGELVHGQAIKIEAAKSR-----KAPST--PTTKIFVGNL 480
N ++G+ + + A R +AP P +++VGNL
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNL 251
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 47.6 bits (108), Expect = 5e-06
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +1
Query: 220 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 375
++ FIG L+ T++ LR FEKYG +VE +V R +GF+ + ++ EAI
Sbjct: 7 YRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIA 66
Query: 376 NLNGELVHGQAIKIEAAK 429
+NG + G+ I ++ A+
Sbjct: 67 AMNGMDLDGRTITVDKAQ 84
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 47.6 bits (108), Expect = 5e-06
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 399
IF+G L TE DL F +G VV I + GFV N Q EAI NLNG ++
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCGFVQFANRQSAEEAIGNLNGTVIG 388
Query: 400 GQAIKIEAAKS 432
+++ +S
Sbjct: 389 KNTVRLSWGRS 399
Score = 29.1 bits (62), Expect = 1.9
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFE-KYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
IF+G+L+ ++A L F +Y +V +V + YGFV +E A+
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274
Query: 379 LNGELVHGQAIKIEAAKSRKA 441
+NG + +++ A ++A
Sbjct: 275 MNGAFCSSRQMRVGIATPKRA 295
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 47.2 bits (107), Expect = 7e-06
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Frame = +1
Query: 193 ESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENE 351
+ + P + +F+ NLS +T +D+ F G VV ++ N YGFV +
Sbjct: 235 DERPPNSVEEVLFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASA 294
Query: 352 QVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTP 453
++A++N NGE +H I I+ AK+ P P
Sbjct: 295 DETKKALENKNGEYLHDHKIFIDVAKTAPYPPGP 328
Score = 35.5 bits (78), Expect = 0.021
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLN 384
+F+ NL +T ++ F+K G VV ++ N GFV + EA+Q N
Sbjct: 129 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 188
Query: 385 GELVHGQAIKIEAAKSRKAPSTP 453
GE + I ++ A ++KA P
Sbjct: 189 GECLDNNKIFLDVA-NKKATYLP 210
Score = 33.9 bits (74), Expect = 0.065
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLN 384
+F+ NLS +T + + F+ VV ++ N+ GFV + ++A+Q +N
Sbjct: 491 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 550
Query: 385 GELVHGQAIKIEAAKSRKAPSTP 453
GE + + I ++ + P P
Sbjct: 551 GENLRSREIFLDVVELAPYPLRP 573
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 47.2 bits (107), Expect = 7e-06
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNG-ELVH- 399
+F GN E DL LF KYG V D+ + FV+ME+E+ +AI+ L+ E
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRK 63
Query: 400 GQAIKIEAAKSRK 438
G+ +++E KS +
Sbjct: 64 GRRLRVEWTKSER 76
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 226 IFIGNL-SDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 402
+F+ N +D T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 99 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMD 158
Query: 403 QAIKIEAA 426
+ I +E A
Sbjct: 159 KVISVEYA 166
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 46.8 bits (106), Expect = 9e-06
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
KIF+G +S T E LR F KYG VV+ I+ R + FV + + A+Q
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ- 93
Query: 379 LNGELVHGQAIKIEAAKSR 435
L+G+ +HG+ I++ A R
Sbjct: 94 LDGQDLHGRRIRVNYATER 112
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 46.4 bits (105), Expect = 1e-05
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Frame = +1
Query: 211 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVEC----DIV---RNYGFVHMENEQVGREA 369
+G +FI NL L F +GT++ C D+V + YGFV E E+ + A
Sbjct: 129 SGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAA 188
Query: 370 IQNLNGELVHGQAIKI-------EAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 513
I LNG L++ + + + + A+S T ++V NL + E+++
Sbjct: 189 IDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKK 243
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/99 (21%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 384
+++ NL D + L+ +F +YG V C ++ N +GFV N + A++ +N
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMN 389
Query: 385 GELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAP 501
G+++ + + + A+ ++ +F + T +P
Sbjct: 390 GKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMSP 428
Score = 33.1 bits (72), Expect = 0.11
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 384
+++ NL + T+ +L+ F KYG + ++ R++GFV+ + + A++ +N
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMN 286
Query: 385 G 387
G
Sbjct: 287 G 287
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLN 384
+F GN E+DL LF KYG V D+ + FV+ME+E+ +AI+ L+
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALD 56
Score = 37.5 bits (83), Expect = 0.005
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 226 IFIGNLSDKTTEA-DLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 402
+F+ N + T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMD 157
Query: 403 QAIKIEAA 426
+ I +E A
Sbjct: 158 KVISVEYA 165
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLN 384
+F GN E+DL LF KYG V D+ + FV+ME+E+ +AI+ L+
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALD 56
Score = 37.5 bits (83), Expect = 0.005
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 226 IFIGNLSDKTTEA-DLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 402
+F+ N + T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 98 LFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMD 157
Query: 403 QAIKIEAA 426
+ I +E A
Sbjct: 158 KVISVEYA 165
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDI--VRNYGFVHMENEQVGREAIQNLNGELVH 399
I + NL TE +L+ F + G V+ I + YG+V + EA+Q + G+++
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIG 298
Query: 400 GQAIKIEAAKS 432
QA++I +K+
Sbjct: 299 QQAVRISWSKN 309
Score = 29.9 bits (64), Expect = 1.1
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Frame = +1
Query: 190 SESKMPGTGTFKIFIGNLSDKTTEADLRPLFE-KYGTVVECDIV--------RNYGFVHM 342
S K+ IF+G+L+ T+ L+ F Y +V +V + YGFV
Sbjct: 106 SGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKF 165
Query: 343 ENEQVGREAIQNLNGELVHGQAIKIEAAKSRK 438
E A+ +NG + ++I AA +K
Sbjct: 166 AEESERNRAMAEMNGLYCSTRPMRISAATPKK 197
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 8/73 (10%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG--------FVHMENEQVGREAIQNL 381
+++G + TE DL +F +YG +V+ +++R+ G F+ E+++ A+ NL
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 382 NGELVHGQAIKIE 420
NG LV G+ IK++
Sbjct: 98 NGALVLGRTIKVD 110
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 45.6 bits (103), Expect = 2e-05
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Frame = +1
Query: 193 ESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMEN 348
+SK G +F+G LS TTE LR + KYG + +VR+ YGFV E
Sbjct: 55 DSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYET 114
Query: 349 EQVGREAIQNLNGELVHGQAIKIEAAKSRKAP 444
E+ A ++ + L+ G+ I ++ + + P
Sbjct: 115 EKEMLRAYEDAHHSLIDGREIIVDYNRQQLMP 146
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 45.2 bits (102), Expect = 3e-05
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +1
Query: 208 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 363
G+G ++++GNLS + L LF + G VVE ++ + +GFV + + Q +
Sbjct: 246 GSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 304
Query: 364 EAIQNLNGELVHGQAIKIEAAKSR 435
+AI +LNG + G+ I++ A++R
Sbjct: 305 KAINSLNGADLDGRQIRVSEAEAR 328
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
K+F+GNLS A L LFE G V +++ R +GFV M A Q
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 379 LNGELVHGQAIKIEA 423
NG G+ +++ A
Sbjct: 160 FNGYEFEGRPLRVNA 174
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 45.2 bits (102), Expect = 3e-05
Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +1
Query: 208 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 363
G+G ++++GNLS + L LF + G VVE ++ + +GFV + + Q +
Sbjct: 254 GSGN-RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQ 312
Query: 364 EAIQNLNGELVHGQAIKIEAAKSR 435
+AI +LNG + G+ I++ A++R
Sbjct: 313 KAINSLNGADLDGRQIRVSEAEAR 336
Score = 39.9 bits (89), Expect = 0.001
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
K+F+GNLS A L LFE G V +++ R +GFV M A Q
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 379 LNGELVHGQAIKIEA 423
NG G+ +++ A
Sbjct: 160 FNGYEFEGRPLRVNA 174
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 399
IF+G L T+ DL+ F ++G +V I + GFV N EA++ LNG ++
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIG 367
Query: 400 GQAIKI 417
Q +++
Sbjct: 368 KQTVRL 373
Score = 36.7 bits (81), Expect = 0.009
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Frame = +1
Query: 193 ESKMPGTGT-FKIFIGNLSDKTTEADLRPLF-EKYGTVVECDIV--------RNYGFVHM 342
E ++ G IF+G+L+ ++A L F EKY +V +V + YGFV
Sbjct: 189 EKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 248
Query: 343 ENEQVGREAIQNLNGELVHGQAIKIEAAKSRK 438
+E +A+ +NG +A++I A RK
Sbjct: 249 GDENERTKAMTEMNGVKCSSRAMRIGPATPRK 280
Score = 28.7 bits (61), Expect = 2.5
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFE--KYGTVVECDIVRN--------YGFVHMENEQVGREAIQ 375
I++G+L + EA L F + +V ++RN YGFV E+ V + +Q
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 376 NLNGELVHG--QAIKIEAA-----KSRKAPSTPTTKIFVGNL 480
NG + Q ++ A + R + P IFVG+L
Sbjct: 165 EFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDL 206
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 45.2 bits (102), Expect = 3e-05
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 399
IF+G L T+ DL+ F ++G +V I + GFV N EA++ LNG ++
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNRPNAEEALEKLNGTVIG 365
Query: 400 GQAIKI 417
Q +++
Sbjct: 366 KQTVRL 371
Score = 35.5 bits (78), Expect = 0.021
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Frame = +1
Query: 193 ESKMPGTGT-FKIFIGNLSDKTTEADLRPLF-EKYGTVVECDIV--------RNYGFVHM 342
E ++ G IF+G+LS ++ L F EKY +V +V + YGFV
Sbjct: 187 EKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 246
Query: 343 ENEQVGREAIQNLNGELVHGQAIKIEAAKSRK 438
+E +A+ +NG +A++I A RK
Sbjct: 247 GDENERTKAMTEMNGVKCSSRAMRIGPATPRK 278
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 44.8 bits (101), Expect = 3e-05
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 399
IF+G + TE DL+ +F ++G +V I + GFV N +A+ LNG +
Sbjct: 280 IFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCGFVQYANRACAEQALSVLNGTQLG 339
Query: 400 GQAIKIEAAKS 432
GQ+I++ +S
Sbjct: 340 GQSIRLSWGRS 350
Score = 27.9 bits (59), Expect = 4.3
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEK-YGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
+F+G+L+ T+ L F+ Y +V +V + YGFV +E A+
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 379 LNGELVHGQAIKIEAAKSRK 438
+NG+ + ++ A ++K
Sbjct: 235 MNGQYCSSRPMRTGPAANKK 254
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.8 bits (101), Expect = 3e-05
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
+IF+G LS TE L F++YG + EC I+ R +GF+ + + +AI++
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 379 LNGELVHGQAIKIEAAKSR 435
++G + + I + A+ +
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 44.8 bits (101), Expect = 3e-05
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
+IF+G LS TE L F++YG + EC I+ R +GF+ + + +AI++
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 379 LNGELVHGQAIKIEAAKSR 435
++G + + I + A+ +
Sbjct: 73 MHGRELGNKVISVNKAEPK 91
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 44.4 bits (100), Expect = 5e-05
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 384
+++G L TE +R +F YG+V+ IV + YGFV N + +AI++++
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 385 GELVHGQAIKIEAAKSRKAPSTP 453
G+ + G+A+++ +R P
Sbjct: 69 GKSIGGRAVRVNDVTTRGGRMNP 91
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 44.4 bits (100), Expect = 5e-05
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 384
+++ NLS+ E LR +F YG +V ++ + +GFV N + ++A + LN
Sbjct: 306 LYVKNLSESMNETRLREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLN 365
Query: 385 GELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAP 501
G LV G+ I + A+ ++ + F T+AP
Sbjct: 366 GFLVDGKPIVVRVAERKEDRIKRLQQYFQAQPRQYTQAP 404
Score = 43.6 bits (98), Expect = 8e-05
Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Frame = +1
Query: 211 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHMENEQVGREAI 372
TG +++ NL T + L +F +G+++ C +V + +GFV + EQ A
Sbjct: 109 TGFANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSAR 168
Query: 373 QNLNGELVHGQAIKI-----EAAKSRKAPSTPTTKIFVGNLTD 486
L+G +V+G+ + + + ++ A + +T ++V NL +
Sbjct: 169 SALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIE 211
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 44.4 bits (100), Expect = 5e-05
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Frame = +1
Query: 217 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 372
T KIF+G + TE +L+ F KYG VVE ++R+ +GFV ++E+V E +
Sbjct: 108 TKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Query: 373 QNLNGELVHGQAIKIEAAKSRKA 441
N + ++I+ A+ +K+
Sbjct: 168 SKGNMIDMADTQVEIKKAEPKKS 190
Score = 40.3 bits (90), Expect = 8e-04
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Frame = +1
Query: 208 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGR 363
G KIFIG L TT F KYG + + I+R+ +GF+ + V
Sbjct: 15 GASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVD 74
Query: 364 EAIQN---LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 513
+ I++ +NG+ V + + A ++ T KIFVG + E+++
Sbjct: 75 KVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKD 127
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 44.0 bits (99), Expect = 6e-05
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
++++GNL T ++L +F + GTVV+ IV R +GFV M + + +EA+Q
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 379 LNGELVHGQAIKI 417
N + G+ +K+
Sbjct: 177 FNSSQIGGRTVKV 189
Score = 38.3 bits (85), Expect = 0.003
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
K++ GNL T L+ F V+ ++ R +GF+ E+ + + A+
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALAT 279
Query: 379 LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVG 474
+NG V G+A+++ A R+ P+ + G
Sbjct: 280 MNGVEVEGRALRLNLASEREKPTVSPPSVEEG 311
>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
protein
Length = 987
Score = 44.0 bits (99), Expect = 6e-05
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +1
Query: 232 IGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVHGQ 405
+ NLS T LR LF GTVV+C I ++ ++ N + A+ LN V G+
Sbjct: 355 VSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKHIAYIEYSNSEEATAALA-LNNTEVFGR 413
Query: 406 AIKIEAAKS 432
A+ +E AKS
Sbjct: 414 ALNVEIAKS 422
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 44.0 bits (99), Expect = 6e-05
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 390
+++GNL E ++ LF KYG VV+ D+ Y FV ++ + +AI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 391 LVHGQAIKIEAAKSRKAPSTPTTKIFVG 474
G +++E A + S T F G
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 44.0 bits (99), Expect = 6e-05
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 390
+++GNL E ++ LF KYG VV+ D+ Y FV ++ + +AI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 391 LVHGQAIKIEAAKSRKAPSTPTTKIFVG 474
G +++E A + S T F G
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 44.0 bits (99), Expect = 6e-05
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 390
+++GNL E ++ LF KYG VV+ D+ Y FV ++ + +AI +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 391 LVHGQAIKIEAAKSRKAPSTPTTKIFVG 474
G +++E A + S T F G
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNG 96
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 43.6 bits (98), Expect = 8e-05
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 378
K++IG LS T E L+ F + V E ++ N YGFV+ +E AI
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 379 LNGELVHGQAIKIEAAKSRKAPSTP 453
+NG+ ++G I + AK PS P
Sbjct: 92 MNGQELNGFNISVNVAKD--WPSLP 114
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 43.6 bits (98), Expect = 8e-05
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Frame = +1
Query: 187 VSESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHM 342
+S++ T KIF+GNL+ +TT DLR FE++G VV+ ++V + YGF+
Sbjct: 1 MSQTNNHDTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF 60
Query: 343 ENEQVGREAIQN 378
+ A+QN
Sbjct: 61 RDYVSTVRALQN 72
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 448 TPTTKIFVGNLTDKTRAPEVR 510
T TKIFVGNLT +T A ++R
Sbjct: 9 TRVTKIFVGNLTWRTTADDLR 29
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 43.6 bits (98), Expect = 8e-05
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNL-NGELVHG 402
+++GN T +DL LF K+G V D+ Y FV+ E+E+ +AI+ N +G
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTFGYG 63
Query: 403 -QAIKIEAAK 429
+ + +E AK
Sbjct: 64 RRKLSVEWAK 73
Score = 35.1 bits (77), Expect = 0.028
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 217 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 393
T +F+ N +T E D+ FE YG V+ + RN+ FV ++ +A+ + +
Sbjct: 94 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSK 153
Query: 394 VHGQAIKIEAA 426
+ + + +E A
Sbjct: 154 LLDKVVSVEYA 164
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 43.6 bits (98), Expect = 8e-05
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Frame = +1
Query: 208 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 363
G+G ++++GNLS + L LF + G VVE ++ + +GFV ++ Q +
Sbjct: 201 GSGN-RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQ 259
Query: 364 EAIQNLNGELVHGQAIKIEAAKSR 435
AI++L+G + G+ I++ A++R
Sbjct: 260 NAIKSLDGADLDGRQIRVSEAEAR 283
Score = 38.7 bits (86), Expect = 0.002
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
K+F+GNL A L LFE G V +++ R +GFV M + A Q
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 379 LNGELVHGQAIKIEA 423
NG + G+ +++ A
Sbjct: 152 FNGYELDGRPLRVNA 166
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 43.6 bits (98), Expect = 8e-05
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Frame = +1
Query: 187 VSESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHME 345
V + + +G IFI NL L F +G ++ C + + YGFV +
Sbjct: 122 VRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYD 181
Query: 346 NEQVGREAIQNLNGELVHGQAIKIE--AAKSRKAPS---TPTTKIFVGNLTDKTRAPEVR 510
++ + AI LNG L++ + + + K ++ PS T ++V NL++ E+
Sbjct: 182 TDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELN 241
Query: 511 EL 516
++
Sbjct: 242 KV 243
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 384
+++ NLS+ ++ +L +F ++G C I+R+ +GFV+ EN A+ LN
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 385 GELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTD 486
G+ + + A+ + T + F +L +
Sbjct: 286 GKTFDDKEWFVGKAQKKSERETELKQKFEQSLKE 319
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 384
+++ NL + T+ LR F +GT+ C ++R+ GFV + AI +N
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMN 388
Query: 385 GELVHGQAIKIEAAKSRK 438
G+++ + + + A+ ++
Sbjct: 389 GKMIVTKPLYVALAQRKE 406
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 43.2 bits (97), Expect = 1e-04
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
KIF+G L+ +TT A+ F KYG + + I+ R +GFV + V + IQ
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVIQ- 101
Query: 379 LNGELVHGQAIKIEAAKSRKAPST---PTTKIFVGNLTDKTRAPEVRE 513
+ ++ G+ ++I+ R + S+ T KIFVG + E +E
Sbjct: 102 -DNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKE 148
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 43.2 bits (97), Expect = 1e-04
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVEC--------DIVRNYGFVHMENEQVGREAIQNL 381
+++G L + +E L LF + G VV ++ +NYGF+ +E+ AI+ L
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 382 NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNL 480
N +HG+ I++ A K +F+GNL
Sbjct: 87 NMIKLHGKPIRVNKASQDKKSLDVGANLFIGNL 119
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV---------RNYGFVHMENEQVGREAIQN 378
+FIGNL E L F +G + + R +GF+ ++ + AI++
Sbjct: 114 LFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIES 173
Query: 379 LNGELVHGQAIKIEAA 426
+ G+ + + I + A
Sbjct: 174 MTGQYLSNRQITVSYA 189
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 42.7 bits (96), Expect = 1e-04
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
K+F+GNLS T L F + G VV +V R YGFV ++ A+++
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALES 237
Query: 379 LNGELVHGQAIKIEAAKSRK 438
L+G + G+AI++ A+ +K
Sbjct: 238 LDGFELEGRAIRVNLAQGKK 257
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
+IF+G LS + T+ DL F ++G +++C I+ R +GF+ + + E+I+
Sbjct: 8 RIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIRE 67
Query: 379 LNGELVHGQAIKIEAAKSR 435
++G + I + A+ +
Sbjct: 68 MHGRDFGDRVISVNRAEPK 86
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 8/64 (12%)
Frame = +1
Query: 220 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 375
++ F+G L+ T + DL+ F ++G V++ I+ R +GFV ++E+ R+AI+
Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65
Query: 376 NLNG 387
+NG
Sbjct: 66 EMNG 69
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 8/74 (10%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 378
++++GNLS TT+ LR F YG VV+ ++R+ +GFV + A+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 379 LNGELVHGQAIKIE 420
++G+ ++G+ + ++
Sbjct: 64 MDGKELNGRRVSVK 77
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 42.3 bits (95), Expect = 2e-04
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 381
+F+ L+ T + DL +F ++GTVV D++R+ Y F+ EN++ +A +
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 382 NGELVHGQAIKIEAAKS 432
+ L+ + I ++ ++S
Sbjct: 305 DNALIDDRRIHVDFSQS 321
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 384
+++ NL + T+ADL+ LF ++G + ++ R +GFV+ E + AI+ +N
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMN 180
Query: 385 GELVHGQAIKIEAAKSRKAPSTPTTK 462
G +V + + + A+ RK T K
Sbjct: 181 GVVVDEKELHVGRAQ-RKTNRTEDLK 205
Score = 40.3 bits (90), Expect = 8e-04
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNLN 384
+++ NL D L LF ++GT+ C ++ + GFV + +A+ +N
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 385 GELVHGQAIKIEAAKSRK 438
G++V + I + A+ ++
Sbjct: 285 GKMVGNKPIYVSLAQCKE 302
>At4g10610.1 68417.m01735 RNA-binding protein, putative
Length = 336
Score = 41.9 bits (94), Expect = 2e-04
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDI------VRNYGFVHMENEQVGREAIQNLNG 387
+++ ++ + TE L LF +G VV+C I V + F+ +E VG NL+G
Sbjct: 152 VYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGDPNSVLRFAFIEFTDE-VGARTALNLSG 210
Query: 388 ELVHGQAIKIEAAKSRKAPSTPT 456
++ +K+ +K+ AP PT
Sbjct: 211 TMLGFYPVKVMPSKTAIAPVNPT 233
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Frame = +1
Query: 217 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAI 372
T KIF+G + TE +L+ F KYG VVE ++R+ +GFV ++E+V E +
Sbjct: 108 TKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELL 167
Query: 373 QNLN 384
N
Sbjct: 168 SKGN 171
Score = 40.3 bits (90), Expect = 8e-04
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 11/113 (9%)
Frame = +1
Query: 208 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGR 363
G KIFIG L TT F KYG + + I+R+ +GF+ + V
Sbjct: 15 GASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVD 74
Query: 364 EAIQN---LNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVRE 513
+ I++ +NG+ V + + A ++ T KIFVG + E+++
Sbjct: 75 KVIEDTHVINGKQVEIKRTIPKGAGGNQSKDIKTKKIFVGGIPSTVTEDELKD 127
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 41.9 bits (94), Expect = 2e-04
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 399
+F+G L T+ L+ +F +YG +V I + GFV + EA++ LNG +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLG 322
Query: 400 GQAIKIEAAKS 432
G +++ +S
Sbjct: 323 GTTVRLSWGRS 333
Score = 28.7 bits (61), Expect = 2.5
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Frame = +1
Query: 190 SESKMPGTGTFKIFIGNLSDKTTEADLRPLFE-KYGTVVECDIV--------RNYGFVHM 342
S K + + IF+G+L+ T+ L F Y +V +V + YGFV
Sbjct: 145 SGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRF 204
Query: 343 ENEQVGREAIQNLNGELVHGQAIKIEAAKSRK 438
+E A+ +NG + ++I A S+K
Sbjct: 205 SDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 41.5 bits (93), Expect = 3e-04
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 399
IF+G L T+ +L+ +F ++G ++ I + GFV N+ A+ LNG +
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLG 321
Query: 400 GQAIKIEAAKS 432
GQ+I++ +S
Sbjct: 322 GQSIRLSWGRS 332
Score = 33.9 bits (74), Expect = 0.065
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEK-YGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
IF+G+L+ + T+ L F+ YG+V +V + YGFV +E A+
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 379 LNGELVHGQAIKIEAAKSRKA-PSTP 453
+NG+ + ++I A ++ A P P
Sbjct: 216 MNGQYCSTRPMRIGPAANKNALPMQP 241
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 384
+++ NL++ TT+ DL+ F +YG + ++++ +GFV+ EN A+++LN
Sbjct: 31 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 90
Query: 385 GELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTD 486
G + + A+ + T + NL +
Sbjct: 91 GHKFDDKEWYVGRAQKKSERETELRVRYEQNLKE 124
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 41.5 bits (93), Expect = 3e-04
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 12/114 (10%)
Frame = +1
Query: 211 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG--------FVHMENEQVGRE 366
+ T K+F+G++ TE ++RP FE++G V+E ++++ FV +
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 367 AIQNLNGEL-VHGQAIKIE---AAKSRKAPSTPTTKIFVGNLTDKTRAPEVREL 516
AI+ L+ ++ + G ++ A R+ T K+FVG+L + EV E+
Sbjct: 177 AIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEI 230
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Frame = +1
Query: 193 ESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENE 351
E + GT FK+F+G+L+ + TE ++ +F ++G V + ++R+ GFV ++
Sbjct: 202 ERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSK 261
Query: 352 QVGREAIQNLNG 387
+ AI LNG
Sbjct: 262 ETAMAAIDGLNG 273
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 41.5 bits (93), Expect = 3e-04
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 12/114 (10%)
Frame = +1
Query: 211 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYG--------FVHMENEQVGRE 366
+ T K+F+G++ TE ++RP FE++G V+E ++++ FV +
Sbjct: 117 SSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADR 176
Query: 367 AIQNLNGEL-VHGQAIKIE---AAKSRKAPSTPTTKIFVGNLTDKTRAPEVREL 516
AI+ L+ ++ + G ++ A R+ T K+FVG+L + EV E+
Sbjct: 177 AIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEEI 230
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Frame = +1
Query: 193 ESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENE 351
E + GT FK+F+G+L+ + TE ++ +F ++G V + ++R+ GFV ++
Sbjct: 202 ERERIGTLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSK 261
Query: 352 QVGREAIQNLNG 387
+ AI LNG
Sbjct: 262 ETAMAAIDGLNG 273
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 41.5 bits (93), Expect = 3e-04
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELVH 399
IF+G + + DLR F ++G VV I + GFV + + +AI++LNG ++
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIG 382
Query: 400 GQAIKIEAAKS 432
+++ +S
Sbjct: 383 KNTVRLSWGRS 393
Score = 32.3 bits (70), Expect = 0.20
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLF-EKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
+F+G+LS T+ L F ++Y +V +V + YGFV +E A+
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 379 LNGELVHGQAIKIEAAKSRKA 441
+NG + +++ A ++A
Sbjct: 264 MNGAYCSNRQMRVGIATPKRA 284
Score = 31.9 bits (69), Expect = 0.26
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 381
+++G+L E L F G V ++RN YGFV + E +QN
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQNY 169
Query: 382 NGELV--HGQAIKIEAA-----KSRKAPSTPTTKIFVGNLT 483
+G ++ Q +I A + R + P +FVG+L+
Sbjct: 170 SGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLS 210
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFV-----HMENEQVGREAIQ--NLN 384
+++G+L+ +TTE+DL LF +YG + + + GF H+E +EA+Q NLN
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGANLN 79
Query: 385 G 387
G
Sbjct: 80 G 80
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/58 (24%), Positives = 23/58 (39%)
Frame = +1
Query: 319 RNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKT 492
RN+ V + + R+ + L G L + IKI + P T + G +T
Sbjct: 399 RNFALVEFRSAEEARQCKEGLQGRLFNNPRIKIMYSNDELPPEQDDTSFYSGMKRSRT 456
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 41.5 bits (93), Expect = 3e-04
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 381
+F+ +S +TE L F +YG V++ D++ + + +V +++ +A+ L
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 382 NGELVHGQAIKIEAAKSRKAPSTPTTK 462
N +LV G+ + ++ K+ K + P TK
Sbjct: 83 NAQLVDGRVVILDTTKAAK-HNPPDTK 108
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 41.1 bits (92), Expect = 4e-04
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Frame = +1
Query: 208 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGR 363
G T KIF+G L TEA+ + F+++GT+ + ++ R +GF+ ++E+
Sbjct: 118 GARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVD 177
Query: 364 EAIQNLNGELVHGQAIKIEAAKSRKAPS-TPTTKIFVG 474
+ EL +G+ ++++ A ++ S TP +G
Sbjct: 178 MVLHKTFHEL-NGKMVEVKRAVPKELSSTTPNRSPLIG 214
Score = 35.9 bits (79), Expect = 0.016
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Frame = +1
Query: 193 ESKMPGTGTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHME 345
E KM K+FIG +S T E L+ F KYG +VE I+R+ +GF+
Sbjct: 5 EQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFA 64
Query: 346 NEQVGREAIQNLNGELVHGQAIKIEAAKSR 435
+ V I ++ ++ G+ ++ + A R
Sbjct: 65 DPSVAERVI--MDKHIIDGRTVEAKKAVPR 92
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 41.1 bits (92), Expect = 4e-04
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 390
I++GNL E ++ LF KYG VV+ D+ Y FV E+ + +AI +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 391 LVHGQAIKIEAAKSRKAPS 447
G +++E A + S
Sbjct: 69 DFDGHHLRVELAHGGRRSS 87
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 41.1 bits (92), Expect = 4e-04
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 390
I++GNL E ++ LF KYG VV+ D+ Y FV E+ + +AI +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 391 LVHGQAIKIEAAKSRKAPS 447
G +++E A + S
Sbjct: 69 DFDGHHLRVELAHGGRRSS 87
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 41.1 bits (92), Expect = 4e-04
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Frame = +1
Query: 202 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQV 357
+P G+ ++FIG L E DLR L E+ G + E ++++ Y FV + + V
Sbjct: 111 LPPHGS-EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDV 169
Query: 358 GREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPEVREL 516
++AI+ L+ + G+ I+ ++++ ++F+GN+ E R++
Sbjct: 170 AQKAIEELHSKEFKGKTIRCSLSETK-------NRLFIGNIPKNWTEDEFRKV 215
Score = 35.5 bits (78), Expect = 0.021
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHMENEQVGREAIQNLNG 387
+++ N+ + T+ L+ LF+++G V + R++GFVH +A+++
Sbjct: 294 LYVKNIPENTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTER 353
Query: 388 ELVHGQAIKIEAAK 429
V+GQ +++ AK
Sbjct: 354 YEVNGQPLEVVLAK 367
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 40.7 bits (91), Expect = 6e-04
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
+++IGN+ T L L E++G V + ++ R +GF M++ + ++
Sbjct: 77 RVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEK 136
Query: 379 LNGELVHGQAIKIEAAKSRKAPS 447
LNG V G+ IK+ + A S
Sbjct: 137 LNGNTVEGREIKVNITEKPIASS 159
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 40.7 bits (91), Expect = 6e-04
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +1
Query: 205 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 360
PG T KIF+G L TE+D + FE++GT + ++ R +GF+ ++E+
Sbjct: 104 PGR-TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAV 162
Query: 361 REAIQNLNGELVHGQAIKIEAAKSRKAPSTPT 456
+ + EL +G+ ++++ A ++ P+
Sbjct: 163 EKVLLKTFHEL-NGKMVEVKRAVPKELSPGPS 193
Score = 33.1 bits (72), Expect = 0.11
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 23/109 (21%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI-- 372
K+FIG +S T E L+ F +G V+E I+ R +GFV + V I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 373 -QNLNGELVHGQAI----------KIEAAKSRKAPSTP--TTKIFVGNL 480
N++G LV + + ++ + +P P T KIFVG L
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGL 115
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 40.7 bits (91), Expect = 6e-04
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Frame = +1
Query: 205 PGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 360
PG T KIF+G L TE+D + FE++GT + ++ R +GF+ ++E+
Sbjct: 104 PGR-TRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAV 162
Query: 361 REAIQNLNGELVHGQAIKIEAAKSRKAPSTPT 456
+ + EL +G+ ++++ A ++ P+
Sbjct: 163 EKVLLKTFHEL-NGKMVEVKRAVPKELSPGPS 193
Score = 33.1 bits (72), Expect = 0.11
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 23/109 (21%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI-- 372
K+FIG +S T E L+ F +G V+E I+ R +GFV + V I
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 373 -QNLNGELVHGQAI----------KIEAAKSRKAPSTP--TTKIFVGNL 480
N++G LV + + ++ + +P P T KIFVG L
Sbjct: 67 KHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGL 115
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 40.3 bits (90), Expect = 8e-04
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
KIF+G L+ +T +R FE++G +VE ++ + YGFV + + A QN
Sbjct: 23 KIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQN 82
Query: 379 LNGELVHGQAIKIEAAKSRKAPSTPTT 459
+N + +A A + P PT+
Sbjct: 83 MNPVIDGRRANCNLACLGAQKPRPPTS 109
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/88 (26%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Frame = +1
Query: 202 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGRE 366
M G + I++GNL E ++ +F KYG +V+ ++ Y FV E+ + +
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60
Query: 367 AIQNLNGELVHGQAIKIEAAKSRKAPST 450
AI+ +G + G +++E A + S+
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRGQSS 88
>At4g25500.2 68417.m03674 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 309
Score = 39.5 bits (88), Expect = 0.001
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 226 IFIGNL-SDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGELVHG 402
+F+ N +D T DL FE YG +V I RN+ F+ E ++ A+ N +
Sbjct: 58 LFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMD 117
Query: 403 QAIKIEAA 426
+ I +E A
Sbjct: 118 KVISVEYA 125
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-------NYGFVHMENEQVGREAIQNL 381
K+F+G L +EA+++ LF KYGT+ + I+R F+ E ++ A++++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 382 NGE 390
NG+
Sbjct: 167 NGK 169
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 324
K+F+G + +E+ L LF+++ V E +I+++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKD 52
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-------NYGFVHMENEQVGREAIQNL 381
K+F+G L +EA+++ LF KYGT+ + I+R F+ E ++ A++++
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 382 NGE 390
NG+
Sbjct: 167 NGK 169
Score = 31.1 bits (67), Expect = 0.46
Identities = 16/73 (21%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 381
+FI N+ + + +L F+ +G V+ + + +GFV +++ + AI +
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 382 NGELVHGQAIKIE 420
NG + G+ +K++
Sbjct: 411 NGRHLGGKKLKVQ 423
Score = 28.3 bits (60), Expect = 3.2
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 324
K+F+G + +E+ L LF+++ V E +I+++
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKD 52
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 38.3 bits (85), Expect = 0.003
Identities = 25/103 (24%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV-RNYGFVHME--NEQVGREAIQNLNGELV 396
+ +GN+S + +L+ LFE++G + +N GF+ + + + + A + L +L+
Sbjct: 219 LLVGNISSNVEDYELKVLFEQFGDIQALHTACKNRGFIMVSYCDIRAAQNAARALQNKLL 278
Query: 397 HGQAIKIEAAKSRKAPSTPTTK---IFVGNLTDKTRAPEVREL 516
G + I + S++ PS T + V NL E+ L
Sbjct: 279 RGTKLDIRYSISKENPSQKDTSKGALLVNNLDSSISNQELNRL 321
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 38.3 bits (85), Expect = 0.003
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 381
+F+GN+ TE LR + + G VV +V + YGF ++E+ A +NL
Sbjct: 11 VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEETALSARRNL 70
Query: 382 NGELVHGQAIKIEAAKSRK 438
++G+ ++++ A++ K
Sbjct: 71 QSYEINGRQLRVDFAENDK 89
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 37.9 bits (84), Expect = 0.004
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Frame = +1
Query: 205 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 357
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 27 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEA 86
Query: 358 GREAIQNLNGELVHGQAIKIEAA 426
+ +Q EL +G+ ++++ A
Sbjct: 87 VDKVLQKTFHEL-NGKMVEVKLA 108
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 37.9 bits (84), Expect = 0.004
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Frame = +1
Query: 205 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 357
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 100 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEA 159
Query: 358 GREAIQNLNGELVHGQAIKIEAA 426
+ +Q EL +G+ ++++ A
Sbjct: 160 VDKVLQKTFHEL-NGKMVEVKLA 181
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 37.9 bits (84), Expect = 0.004
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Frame = +1
Query: 205 PG-TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 357
PG + + KIF+G L+ TEA+ + F ++G + + ++ R +GF+ ++E+
Sbjct: 100 PGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEA 159
Query: 358 GREAIQNLNGELVHGQAIKIEAA 426
+ +Q EL +G+ ++++ A
Sbjct: 160 VDKVLQKTFHEL-NGKMVEVKLA 181
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 37.9 bits (84), Expect = 0.004
Identities = 18/73 (24%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 381
+F+ SD +E L+ +F ++G V I+ N YG+V +++ + A++ +
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 138
Query: 382 NGELVHGQAIKIE 420
NG+ G+ I ++
Sbjct: 139 NGKFFDGRFILVK 151
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 37.5 bits (83), Expect = 0.005
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-------YGFVHMENEQVGREAIQNLN 384
+ + NLS T A ++ F VV +V N YGFV + +A++ N
Sbjct: 160 VIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANKALEEKN 219
Query: 385 GELVHGQAIKIEAAKSRKAP-----STPTTKIFVGNLTDKTRAPEV 507
GE +H KI K ++P + T +FV NL D + ++
Sbjct: 220 GEYLHNH--KILLMKGHESPGFAEEAAITKTLFVANLRDSIQISDI 263
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 37.5 bits (83), Expect = 0.005
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDI-----VRNYGFVHMENEQVGREAIQNLNGE 390
I++GNL + ++ LF KYG +V+ D+ Y FV E+ + +AI +G
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 391 LVHGQAIKIEAA 426
G +++E A
Sbjct: 69 DFDGCRLRVEIA 80
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 37.1 bits (82), Expect = 0.007
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +1
Query: 232 IGNLSDKTTEADLRPLFEKYGTVV--------ECDIVRNYGFVHMENEQVGREAIQNLNG 387
+ NLS+ T E DL LF +G V + + R +GFV+ + + + AI LNG
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNG 276
Query: 388 ELVHGQAIKIEAAKSR 435
+++E A R
Sbjct: 277 YGYDNLILRVEWATPR 292
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 37.1 bits (82), Expect = 0.007
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-------RNYGFVHMENEQVGREAIQNL 381
K+F+ NL + D+ LF + GTV +I+ R + FV M + + + AI
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKF 155
Query: 382 NGELVHGQAIKIEAAKSRK-------------APSTPTTKIFVGNLTDKTRAPEVREL 516
+ V G+ I + A+ K AP K++V NL K R+ +REL
Sbjct: 156 DTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHLREL 213
Score = 33.1 bits (72), Expect = 0.11
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Frame = +1
Query: 196 SKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYG-TVVECDIV--------RNYGFVHMEN 348
S PG K+++ NL+ K LR LF V +V YGFV
Sbjct: 186 SPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFAT 245
Query: 349 EQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTD 486
+ AI LNG+ + G+ I ++ + + S + N ++
Sbjct: 246 REEAENAITKLNGKEIMGRPITLKFSLRSASESEDGDSVEANNASE 291
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 37.1 bits (82), Expect = 0.007
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Frame = +1
Query: 208 GTGTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 360
G TF K+F+G L+ +T LR FE+YG ++E ++ + YGFV + +
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAA 78
Query: 361 REAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTR 495
R A + ++ G+ A S P P + N+ + R
Sbjct: 79 RRACADPT-PIIDGRRANCNLA-SLGRPRPPLPYAVIPNMPGRLR 121
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 36.7 bits (81), Expect = 0.009
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Frame = +1
Query: 217 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV-----------RNYGFVHMENEQVGR 363
T +++GNLS K E L F ++G + I+ RN GFV N G+
Sbjct: 178 TTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMNRADGQ 237
Query: 364 EAIQNLNGELVHGQAIKIEAAKSRKAPS 447
A + G +V+ +KI K+ PS
Sbjct: 238 AAKDEMQGIIVYEYELKIGWGKAVSLPS 265
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 36.7 bits (81), Expect = 0.009
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Frame = +1
Query: 211 TGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGRE 366
+G + I NL DLR FE++G + + + RNY GFV + E
Sbjct: 44 SGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAE 103
Query: 367 AIQNLNGELVHGQAIKIE-AAKSRKAPSTPTT 459
A++ +N +++ G+ I I A ++RK P T
Sbjct: 104 AMKRMNHKVIGGREIAIVFAEENRKTPQEMRT 135
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 36.7 bits (81), Expect = 0.009
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Frame = +1
Query: 220 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQ 375
F+IF+G+L +E DL+ +F G V E I++N F+ + + A++
Sbjct: 214 FEIFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVK 273
Query: 376 NLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKTRAPE 504
L +++G+ + A++ +FVGN+ K PE
Sbjct: 274 ELKSPMINGKKCGVTASQDNDT-------LFVGNIC-KIWTPE 308
Score = 26.6 bits (56), Expect = 9.9
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 381
IFI L E +R L + YG + + ++ RN +GFV + + + +
Sbjct: 393 IFIDGLLPSWNEERVRDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFI 452
Query: 382 -NGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDKT 492
N EL G+ + AK R S P K G + ++
Sbjct: 453 NNSELGEGE----DKAKVRARLSRPLQKAGKGRQSSRS 486
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 36.7 bits (81), Expect = 0.009
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 375
IF+ TT+ +L+ FE YG + EC +V + YGFV + + REA++
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALK 467
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 36.3 bits (80), Expect = 0.012
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Frame = +1
Query: 232 IGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNLNG 387
+ NLS+ T DL LF +G V C + R +GFV + + + AI LNG
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNG 237
Query: 388 ELVHGQAIKIE 420
+++E
Sbjct: 238 YGYDNLILRVE 248
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.9 bits (79), Expect = 0.016
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Frame = +1
Query: 208 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN----E 351
G T KIF+G L TE + + F+++GT+ + ++ R +GF+ ++ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Query: 352 QVGREAIQNLNGELV 396
+V + LNG+LV
Sbjct: 166 RVLHKTFHELNGKLV 180
Score = 35.5 bits (78), Expect = 0.021
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 378
K+FIG +S T E LR F YG VVE I+R+ +GF+ + V I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 379 LNGELVHGQAIKIEAAKSR 435
++ ++ G+ ++ + A R
Sbjct: 65 MDKHIIDGRTVEAKKAVPR 83
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 35.9 bits (79), Expect = 0.016
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Frame = +1
Query: 208 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN----E 351
G T KIF+G L TE + + F+++GT+ + ++ R +GF+ ++ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Query: 352 QVGREAIQNLNGELV 396
+V + LNG+LV
Sbjct: 166 RVLHKTFHELNGKLV 180
Score = 35.5 bits (78), Expect = 0.021
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 378
K+FIG +S T E LR F YG VVE I+R+ +GF+ + V I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 379 LNGELVHGQAIKIEAAKSR 435
++ ++ G+ ++ + A R
Sbjct: 65 MDKHIIDGRTVEAKKAVPR 83
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 35.9 bits (79), Expect = 0.016
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 12/75 (16%)
Frame = +1
Query: 208 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMEN----E 351
G T KIF+G L TE + + F+++GT+ + ++ R +GF+ ++ +
Sbjct: 106 GGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVD 165
Query: 352 QVGREAIQNLNGELV 396
+V + LNG+LV
Sbjct: 166 RVLHKTFHELNGKLV 180
Score = 35.5 bits (78), Expect = 0.021
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 378
K+FIG +S T E LR F YG VVE I+R+ +GF+ + V I
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVI-- 64
Query: 379 LNGELVHGQAIKIEAAKSR 435
++ ++ G+ ++ + A R
Sbjct: 65 MDKHIIDGRTVEAKKAVPR 83
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.9 bits (79), Expect = 0.016
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 381
++IG L + L LF +G +V ++++ YGFV + Q+ A+Q +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 382 NGELVHGQAIKIEAAKSRKAPSTP 453
NG G+ + + A P P
Sbjct: 542 NGYRFEGRTLAVRIAGKSPPPIAP 565
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 35.9 bits (79), Expect = 0.016
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 381
++IG L + L LF +G +V ++++ YGFV + Q+ A+Q +
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541
Query: 382 NGELVHGQAIKIEAAKSRKAPSTP 453
NG G+ + + A P P
Sbjct: 542 NGYRFEGRTLAVRIAGKSPPPIAP 565
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 35.9 bits (79), Expect = 0.016
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Frame = +1
Query: 187 VSESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHM 342
V ES + IF+ L TT +L+ FE YG + EC +V + +GFV
Sbjct: 152 VFESADRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLF 211
Query: 343 ENEQVGREAIQN 378
+ + R A++N
Sbjct: 212 KTRKGARAALKN 223
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 35.9 bits (79), Expect = 0.016
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Frame = +1
Query: 217 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI 372
T KIF+G LS TTE + + FE++G + ++ R +GFV ++E E +
Sbjct: 119 TKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSED-SVEVV 177
Query: 373 QNLNGELVHGQAIKIEAA 426
N + + ++++ A
Sbjct: 178 MQSNFHELSDKRVEVKRA 195
Score = 35.1 bits (77), Expect = 0.028
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
Frame = +1
Query: 220 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 351
+K+F+G ++ +T+E L+ F +YG V+E + R +GFV N+
Sbjct: 6 YKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFAND 57
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 35.5 bits (78), Expect = 0.021
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Frame = +1
Query: 202 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQV 357
+P G+ ++++G + TE DL+ G V E I+R Y FV ++ +
Sbjct: 87 LPPHGS-EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDL 145
Query: 358 GREAIQNLNGELVHGQAIKIEAAKSR 435
EAI LN G+ IK +++
Sbjct: 146 AAEAIDTLNNTDFRGKRIKCSTTQAK 171
Score = 30.7 bits (66), Expect = 0.61
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQNL 381
++I NL T+ L+ LFE +G +++ I YGFVH A++N
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNT 329
Query: 382 NGELVHGQAIKIEAAKSRKAPSTPTTKI 465
+ G + AK + T T +
Sbjct: 330 ERYEIDGHMLDCTLAKPQADQKTNTNTV 357
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 35.5 bits (78), Expect = 0.021
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 20/118 (16%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQN 378
K+++ +S TE D+R +FEKYG V E + ++ Y F+ + + G AI
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIAA 170
Query: 379 LN------GELVHGQAIKIEAAKSR------KAPSTPTTKIFVGNLTDKTRAPEVREL 516
L GE++ + EA + R + P P K++V L +T EV E+
Sbjct: 171 LTEQFTFPGEMLPVKVRFAEAERERIGFAPVQLPDNP--KLYVRCLNKQTTKMEVNEV 226
Score = 32.3 bits (70), Expect = 0.20
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVEC-------DIVRNYGFVHMENEQVGREAIQNL 381
K+++ L+ +TT+ ++ +F +YG + + I R Y FV +++ AI+ L
Sbjct: 208 KLYVRCLNKQTTKMEVNEVFSRYGIIEDIYMALDDMKICRGYAFVQFSCKEMALAAIKAL 267
Query: 382 NG 387
NG
Sbjct: 268 NG 269
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 35.5 bits (78), Expect = 0.021
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Frame = +1
Query: 193 ESKMPGTGT-FKIFIGNLSDKTTEADLRPLF-EKYGTVVECDIV--------RNYGFVHM 342
E ++ G IF+G+LS ++ L F EKY +V +V + YGFV
Sbjct: 187 EKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRF 246
Query: 343 ENEQVGREAIQNLNGELVHGQAIKIEAAKSRK 438
+E +A+ +NG +A++I A RK
Sbjct: 247 GDENERTKAMTEMNGVKCSSRAMRIGPATPRK 278
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 35.1 bits (77), Expect = 0.028
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Frame = +1
Query: 187 VSESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-----YGFVHMENE 351
VS ++ + I++GN+ T +++ F+ GTV I+ + GF ++E
Sbjct: 92 VSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV 151
Query: 352 QVGREAIQN---LNGELVHGQAIKIEAAKS 432
+V EA+QN LN +HG+ IK+ A ++
Sbjct: 152 EV--EAVQNSLILNESELHGRQIKVSAKRT 179
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 35.1 bits (77), Expect = 0.028
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +1
Query: 217 TFKIFIGNLSD-KTTEADLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNLNGEL 393
T +F+ N +T E D+ FE YG V+ + RN+ FV ++ +A+ + +
Sbjct: 68 TKTLFVINFDPIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSK 127
Query: 394 VHGQAIKIEAA 426
+ + + +E A
Sbjct: 128 LLDKVVSVEYA 138
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 35.1 bits (77), Expect = 0.028
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
K+F+G L+ +T ++R FE++G ++E I+ + YGFV A+ +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 379 LNGELVHGQAIKIEAAK-SRKAPSTP 453
N ++ G+ A R PS P
Sbjct: 78 PN-PVIDGRKANCNIASFGRPRPSPP 102
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 35.1 bits (77), Expect = 0.028
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
K+F+G L+ +T ++R FE++G ++E I+ + YGFV A+ +
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 379 LNGELVHGQAIKIEAAK-SRKAPSTP 453
N ++ G+ A R PS P
Sbjct: 78 PN-PVIDGRKANCNIASFGRPRPSPP 102
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 34.7 bits (76), Expect = 0.037
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 381
+F+ SD +E L+ +F ++G V I+ N YG+V +++ + A++ +
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 119
Query: 382 NGEL 393
NG++
Sbjct: 120 NGKV 123
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 34.7 bits (76), Expect = 0.037
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Frame = +1
Query: 208 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTV--------VECDIVRNYGFVHMENEQVGR 363
G K+++GNL +E LR +FE +G V E + +GF+ + +
Sbjct: 261 GPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSK 320
Query: 364 EAIQNLNGEL-VHGQAIKIEA 423
A LNG+L + G+ IK+ +
Sbjct: 321 AAQIALNGKLEIAGRTIKVSS 341
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 34.7 bits (76), Expect = 0.037
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Frame = +1
Query: 217 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAI 372
T KIF+G L T+ + R FE YG V + I+ R +GFV ++E +
Sbjct: 109 TKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVL 168
Query: 373 QNLNGELVHGQAIKIEAAKSRKA 441
+L G+ ++++ A + A
Sbjct: 169 HKTFHDL-SGKQVEVKRALPKDA 190
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 324
K+F+G +S +T E LR F YG V + ++R+
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRD 40
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 34.7 bits (76), Expect = 0.037
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 9/63 (14%)
Frame = +1
Query: 208 GTGTF-KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVG 360
G TF K+F+G L+ +T LR F++YG ++E ++ + YGFV + +
Sbjct: 19 GDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAA 78
Query: 361 REA 369
R A
Sbjct: 79 RRA 81
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 34.3 bits (75), Expect = 0.049
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Frame = +1
Query: 202 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 357
M T K+F+G L+ +T + LR FE++G +VE ++ + YGFV + +
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 358 GREAIQNLNGELVHGQAIKIEAAK---SRKAPSTP 453
++A + ++ G+ A R PS+P
Sbjct: 61 AQKACVD-PAPVIDGRRANCNLAAFGVQRSKPSSP 94
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 34.3 bits (75), Expect = 0.049
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Frame = +1
Query: 202 MPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQV 357
M T K+F+G L+ +T + LR FE++G +VE ++ + YGFV + +
Sbjct: 1 MEDTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEA 60
Query: 358 GREAIQNLNGELVHGQAIKIEAAK---SRKAPSTP 453
++A + ++ G+ A R PS+P
Sbjct: 61 AQKACVD-PAPVIDGRRANCNLAAFGVQRSKPSSP 94
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 33.9 bits (74), Expect = 0.065
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +1
Query: 226 IFIG-NLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELV 396
++IG S K +A LR +F +G + + + R+Y FV N +A ++L G+L
Sbjct: 153 LYIGFPASLKVDDALLRNVFSSFGEITKVTVFPGRSYAFVQFRNLMAACKAKESLQGKLF 212
Query: 397 HGQAIKIEAAKSRKAPS 447
+ I AKS + S
Sbjct: 213 GNPRVHICFAKSEPSSS 229
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 33.9 bits (74), Expect = 0.065
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + R A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 379 LNGELVHGQAIKIEAAK---SRKAPSTP 453
++ G+ A R PSTP
Sbjct: 74 AT-PVIDGRRANCNLASLGLQRSKPSTP 100
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 33.9 bits (74), Expect = 0.065
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + R A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 379 LNGELVHGQAIKIEAAK---SRKAPSTP 453
++ G+ A R PSTP
Sbjct: 74 AT-PVIDGRRANCNLASLGLQRSKPSTP 100
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 33.9 bits (74), Expect = 0.065
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
K+F+G L+ +T + ++ FE++G ++E ++ + YGFV + R A +
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 379 LNGELVHGQAIKIEAAK---SRKAPSTP 453
++ G+ A R PSTP
Sbjct: 74 AT-PVIDGRRANCNLASLGLQRSKPSTP 100
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 33.9 bits (74), Expect = 0.065
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-----NYG--FVHMENEQVGREAIQNL 381
K+F+G L +E +++ LF +YGT+ + I+R + G F+ E+++ A++ L
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 169
Query: 382 NG 387
NG
Sbjct: 170 NG 171
Score = 31.5 bits (68), Expect = 0.35
Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Frame = +1
Query: 190 SESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHME 345
S + G +FI N+ + + +L F+ +G V+ + + +GF+ +
Sbjct: 329 SSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYD 388
Query: 346 NEQVGREAIQNLNGELVHGQAIKIE 420
++ + AI +NG + G+ +K++
Sbjct: 389 SQAAAQNAINTMNGCQLSGKKLKVQ 413
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 33.9 bits (74), Expect = 0.065
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIVR-----NYG--FVHMENEQVGREAIQNL 381
K+F+G L +E +++ LF +YGT+ + I+R + G F+ E+++ A++ L
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSKGCLFLKYESKEQAVAAMEAL 160
Query: 382 NG 387
NG
Sbjct: 161 NG 162
Score = 31.5 bits (68), Expect = 0.35
Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Frame = +1
Query: 190 SESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHME 345
S + G +FI N+ + + +L F+ +G V+ + + +GF+ +
Sbjct: 320 SSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFGFISYD 379
Query: 346 NEQVGREAIQNLNGELVHGQAIKIE 420
++ + AI +NG + G+ +K++
Sbjct: 380 SQAAAQNAINTMNGCQLSGKKLKVQ 404
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 33.5 bits (73), Expect = 0.086
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 193 ESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY 327
E + P +IF+ + +E+D R FE+YG + + + ++Y
Sbjct: 82 EMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDY 126
Score = 27.5 bits (58), Expect = 5.7
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
KIF+G L + + DLR F ++G + + I R +GFV V + +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVA-DRVAR 299
Query: 379 LNGELVHGQAIKIEAA 426
+ E+ GQ + I++A
Sbjct: 300 RSHEIC-GQEVAIDSA 314
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 33.5 bits (73), Expect = 0.086
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGREAIQNL 381
+ + NL + DLR FE++G V + + R+Y GF+ + EA +
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQM 98
Query: 382 NGELVHGQAIKIE-AAKSRKAPSTPTTKIFVG---NLTDKTRAP 501
+G L+ G+ + + A ++RK P+ T+ G D+ R+P
Sbjct: 99 DGYLLLGRELTVVFAEENRKKPTEMRTRDRGGRSNRFQDRRRSP 142
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 33.5 bits (73), Expect = 0.086
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY-------GFVHMENEQVGREAIQNLN 384
+F+ NLS +T D+ + G VV ++ N+ FV + ++ ++N N
Sbjct: 129 LFVANLSPQTKILDIFGFCQDVGEVVSVRLIANHEDKPVGCAFVEFLSANEAKKVLENKN 188
Query: 385 GELVHGQAI 411
GE HG I
Sbjct: 189 GEYFHGHKI 197
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 33.5 bits (73), Expect = 0.086
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
KIF+ L +TT L +FE YG + EC +V + +GFV + + +EA++
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 379 LNGELVHG----QAIKIEAAKSRKAPSTP-TTKIFVGNLTD 486
+++ Q + A S K P KI +G++ +
Sbjct: 165 PKKRILNRTATCQLASMGPAASGKGHDQPGPVKISMGSMAN 205
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 33.5 bits (73), Expect = 0.086
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQN 378
KIF+ L +TT L +FE YG + EC +V + +GFV + + +EA++
Sbjct: 105 KIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Query: 379 LNGELVHG----QAIKIEAAKSRKAPSTP-TTKIFVGNLTD 486
+++ Q + A S K P KI +G++ +
Sbjct: 165 PKKRILNRTATCQLASMGPAASGKGHDQPGPVKISMGSMAN 205
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 33.1 bits (72), Expect = 0.11
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Frame = +1
Query: 217 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQ----VG 360
T KIF+G L T + R FE YG V + I+ R +GFV ++E V
Sbjct: 109 TKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVL 168
Query: 361 REAIQNLNGELV 396
+ +LNG+ V
Sbjct: 169 HKTFHDLNGKQV 180
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 33.1 bits (72), Expect = 0.11
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGREAIQNL 381
+ + NL + DLR FE++G V + + R+Y GFV + +A ++
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHM 97
Query: 382 NGELVHGQAIKIE-AAKSRKAPSTPTTK-IFVGNLTDKTRAP 501
+G L+ G+ + + A ++RK P+ + G D+ R P
Sbjct: 98 DGYLLLGRELTVVFAEENRKKPTEMRARERGGGRFRDRRRTP 139
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 32.3 bits (70), Expect = 0.20
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 14/121 (11%)
Frame = +1
Query: 190 SESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHME 345
S S M G K+F+G +S +TT F K+G VV+ I+ R +GFV
Sbjct: 58 SSSSMSSPG--KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFA 115
Query: 346 NEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPST------PTTKIFVGNLTDKTRAPEV 507
+ V + ++ ++ + + ++ R T T KIFVG L E+
Sbjct: 116 DSAVAEKVLE--EDHVIDDRKVDLKRTLPRGDKDTDIKAVSKTRKIFVGGLPPLLEEDEL 173
Query: 508 R 510
+
Sbjct: 174 K 174
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Frame = +1
Query: 217 TFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENE 351
T KIF+G L E +L+ F YG ++E I+ R +GFV + E
Sbjct: 156 TRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTE 208
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 31.9 bits (69), Expect = 0.26
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +1
Query: 220 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNYGFVHMENE 351
F ++GNL T E DL+ F ++G V+ ++ ++ F ++ E
Sbjct: 8 FTCYVGNLESDTEENDLKNAFSQFGDVIHSNVRFSFHFSLIDYE 51
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 31.5 bits (68), Expect = 0.35
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGELV- 396
+++G L+ + E D+R F +G + I+ + FV + + +A Q L+ LV
Sbjct: 230 LYVGGLNSRILEQDIRDQFYAHGEIESIRILADKACAFVTYTSREGAEKAAQELSNRLVI 289
Query: 397 HGQAIKI 417
+GQ +K+
Sbjct: 290 NGQRLKL 296
>At1g43190.1 68414.m04977 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599, [Homo sapiens] GI:35770; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 432
Score = 31.1 bits (67), Expect = 0.46
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Frame = +1
Query: 226 IFIGNLS-DKTTEADLRPLFEKYGTVVECDIVRN---YGFVHMENEQVGREAIQNLNGEL 393
+ + NL+ D E L LF YG +V ++RN + V M + A+ L G +
Sbjct: 247 VLVSNLNADSIDEDKLFNLFSLYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAM 306
Query: 394 VHGQAIKIEAAK 429
+ G+ +++ +K
Sbjct: 307 LFGKRLEVNFSK 318
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 30.7 bits (66), Expect = 0.61
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQNL 381
++IG + E ++ F ++GTV + RN +GF+ E+ +V A +
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGAM 121
Query: 382 NGELVHGQAIKI 417
N L+ +K+
Sbjct: 122 NDYLLMEHMLKV 133
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 30.3 bits (65), Expect = 0.80
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN-----YGFVHMENEQVG--REAIQNLN 384
+F+GN+ T +++ F+ GTV I+ + GF ++E +V +EA+Q LN
Sbjct: 94 VFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQ-LN 152
Query: 385 GELVHGQAIKIEAAKSRKAPSTPTTKIFVG 474
+HG+ +K+ +K + P K F G
Sbjct: 153 ESELHGRQLKV----LQKRTNVPGLKQFRG 178
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 30.3 bits (65), Expect = 0.80
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENEQVGREAIQNLNGEL-V 396
+++G L+ + E D+R F +G + I+ + FV + +A + L+ L V
Sbjct: 230 LYVGGLNSRVLEQDIRDQFYAHGEIESIRILAEKACAFVTYTTREGAEKAAEELSNRLVV 289
Query: 397 HGQAIKI 417
+GQ +K+
Sbjct: 290 NGQRLKL 296
>At5g49000.1 68418.m06062 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 372
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 203 ILDSETHTFHEMSQQRLKRWYFSENI 126
ILD +HT+HE R+KR Y + N+
Sbjct: 149 ILDCRSHTWHEAPSMRMKRNYPAANV 174
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +1
Query: 325 YGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSRKAPSTPTTKIFVGNLTDK 489
YGFV + + A++ NGE +H I + AK+ AP P K NL +K
Sbjct: 724 YGFVEFASPCLANMALEKKNGEYLHDHKIFLGVAKT--APYPPRIKY---NLAEK 773
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Frame = +1
Query: 220 FKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN--------YGFVHMENEQVGREAIQ 375
+++F G+L ++ + L F ++ T ++R+ YGFV N A++
Sbjct: 137 YRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAALK 196
Query: 376 NLNGELVHGQAIKI 417
+NG+ V + IK+
Sbjct: 197 EMNGKYVGNRPIKL 210
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 29.5 bits (63), Expect = 1.4
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Frame = +1
Query: 214 GTFKIFIGNLSDKTTEADLRPLFE-------KYGTVVECDIVRNYGFVHMENEQVGREAI 372
G +++IGNL+ TTE D+R LF + G E + Y V + + V
Sbjct: 260 GYNRVYIGNLAWDTTERDIRKLFSDCVINSVRLGKNKETGEFKGYAHVDFK-DSVSVAIA 318
Query: 373 QNLNGELVHGQAIKIEAA-KSRKA 441
L+ +++ G+ +KI A K R A
Sbjct: 319 LKLDQQVICGRPVKICCALKDRPA 342
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGT--VVECD--IVRNYGFVHMENEQVGREAIQNLNGEL 393
+ + +L D + LF +YG V C +RN FV +NE +A + LNG
Sbjct: 30 LLVRHLPDGIPHDIVSRLFSQYGASAVRPCSGGKLRNAAFVDFKNEAFASQAHRQLNGLR 89
Query: 394 VHGQAIKIEAA 426
G+ ++++ A
Sbjct: 90 FLGKVLQVQRA 100
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 29.1 bits (62), Expect = 1.9
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFV---HMENEQVG-RE 366
K+FI L+ TT LR LF YG + E ++ + YGFV H++ + +E
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 367 AIQNLNGELVHGQ-AIKIEAAKSRKAPSTPTTKIFVGNL 480
+ ++G + Q A + KI+V N+
Sbjct: 136 PSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANV 174
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 29.1 bits (62), Expect = 1.9
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFV---HMENEQVG-RE 366
K+FI L+ TT LR LF YG + E ++ + YGFV H++ + +E
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 367 AIQNLNGELVHGQ-AIKIEAAKSRKAPSTPTTKIFVGNL 480
+ ++G + Q A + KI+V N+
Sbjct: 136 PSKKIDGRVTVTQLAASGNQGTGSQIADISMRKIYVANV 174
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 214 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 324
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 214 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 324
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 214 GTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRN 324
G +IF+G L TE+ +R L E +G + D+V++
Sbjct: 357 GPDRIFVGGLPYYFTESQVRELLESFGGLKGFDLVKD 393
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 28.7 bits (61), Expect = 2.5
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 12/102 (11%)
Frame = +1
Query: 178 NVCVSESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGF 333
N C ++K+ K+F+G L+ T + + F KYG ++E I+ + YGF
Sbjct: 8 NGCFGDTKLT-----KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGF 62
Query: 334 VHMENEQVGREAIQNLNGELVHGQAIKIEAA----KSRKAPS 447
V ++ + A ++ + +++G+ A + RK+P+
Sbjct: 63 VTFKDAKAATRACED-STPIINGRRANCNLASLGGRLRKSPT 103
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 28.7 bits (61), Expect = 2.5
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Frame = +1
Query: 190 SESKMPGTGTFKIFIGNLSDKTTEADLRPLFE-KYGTVVECDIV--------RNYGFVHM 342
S K + + IF+G+L+ T+ L F Y +V +V + YGFV
Sbjct: 145 SGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRF 204
Query: 343 ENEQVGREAIQNLNGELVHGQAIKIEAAKSRK 438
+E A+ +NG + ++I A S+K
Sbjct: 205 SDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVECDIV--RNYGFVHMENE 351
+F+G L T+ L+ +F +YG +V I + GFV +
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCGFVQFSEK 306
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 28.7 bits (61), Expect = 2.5
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV------RNYGFVHME-NEQVGREAIQNL 381
K+++GNL T LR F K+GT+V ++ RN F + R+A +
Sbjct: 213 KVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALSF 272
Query: 382 NGELVHGQAI 411
NG G+ I
Sbjct: 273 NGTQYEGRRI 282
>At4g39550.1 68417.m05592 kelch repeat-containing F-box family
protein similar to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 392
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 212 VPGILDSETHTFHEMSQQRLKRWYFSENINE 120
+ +LD ++HT+HE R++R Y + N+ E
Sbjct: 163 IVSVLDCQSHTWHEGPGMRVERRYPAANVVE 193
>At4g22200.1 68417.m03209 potassium channel protein 2 (AKT2) (AKT3)
identical to potassium channel [Arabidopsis thaliana]
gi|1100898|gb|AAA97865; Note: also identical to AKT3
[Arabidopsis thaliana] gi|1172218|gb|AAA96153, which is
a truncated version of AKT2, PMID:10852932; member of
the 1 pore, 6 transmembrane (1P/6TM- Shaker-type) K+
channel family, PMID:11500563; identical to cDNA
inward-rectifying K+ channel (AKT3) GI:1172219
Length = 802
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 15 WSLFGVHIFNLCYILLFFVHSNPCKYY 95
+S F + F L + LF VH C YY
Sbjct: 209 YSYFWIRCFRLLSVTLFLVHCAGCSYY 235
>At5g25790.1 68418.m03061 tesmin/TSO1-like CXC domain-containing
protein similar to SP|Q9Y4I5 Tesmin
(Metallothionein-like 5, testis-specific) {Homo
sapiens}; contains Pfam profile PF03638:
Tesmin/TSO1-like CXC domain
Length = 408
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 143 TIASDAADSFREMYAFQNLKCRAPVLSKSSSGTFLIKPQKPILDRYSKNTVR 298
+I ++ DSF++ + + C +PV S S T + PQKP L ++ N V+
Sbjct: 17 SIPAEKMDSFQK--SLEPPPC-SPVKSSQQSETEVTPPQKPPLHQFGHNQVQ 65
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 27.9 bits (59), Expect = 4.3
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTVVE---CDIVRNYGFVHMENEQVGREAIQNLNG 387
+FI NL +TT L+ LFE+Y E D FV E++ A+Q L G
Sbjct: 160 LFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQG 216
>At1g67140.1 68414.m07638 expressed protein
Length = 2158
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 55 YCYSLYIVTHVSIISNFIYPVYSLIFSEKYHRFR 156
+ ++ I+ H N++YPV SLIF + FR
Sbjct: 910 FLFATIILIHCYYYMNYLYPVSSLIFIVNLNIFR 943
>At1g29400.2 68414.m03597 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTV-VECDIVRNYGFVHMENEQV--GREAIQNLNGELV 396
+F+ N++ +++L LFE+YG + ++ GFV + + R A+++L + +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 397 HGQAIKIEAAKSRKAPS 447
+ + I + + PS
Sbjct: 230 RRRKLDIHFSIPKDNPS 246
>At1g29400.1 68414.m03596 RNA recognition motif (RRM)-containing
protein similar to GI:6650523 from [Arabidopsis
thaliana]
Length = 800
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/77 (22%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTV-VECDIVRNYGFVHMENEQV--GREAIQNLNGELV 396
+F+ N++ +++L LFE+YG + ++ GFV + + R A+++L + +
Sbjct: 170 LFVRNINSNVEDSELTALFEQYGDIRTLYTTCKHRGFVMISYYDIRSARMAMRSLQNKPL 229
Query: 397 HGQAIKIEAAKSRKAPS 447
+ + I + + PS
Sbjct: 230 RRRKLDIHFSIPKDNPS 246
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 178 NVCVSESKMPGTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVE 306
N ++S + G +F+G L TT+A++ + +YG V E
Sbjct: 188 NKSPTQSFVVDNGNTMLFVGELHWWTTDAEIESVLSQYGRVKE 230
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 208 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVE 306
G G F +F+G+L TT+A+L KYG V E
Sbjct: 231 GGGAF-LFVGDLHWWTTDAELEAELCKYGAVKE 262
>At5g14690.1 68418.m01721 expressed protein predicted protein,
Arabidopsis thaliana
Length = 217
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 319 RNYGFVHMENEQVGREAIQNLNGELVHGQAIKIEAAKSR 435
RN+G H +N+ V E + + HG +K + + R
Sbjct: 11 RNHGGTHCQNDAVDEENRRRRHNHHTHGDEVKCSSKRCR 49
>At1g59740.1 68414.m06726 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 591
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 84 CKYYFKFHLSRVLVNILGKIPS 149
C Y F F+ S VLV+++ KI S
Sbjct: 509 CSYSFGFYFSSVLVSVVNKITS 530
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/73 (23%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Frame = +1
Query: 226 IFIGNLSDKTTEADLRPLFEKYGTV--VECDIVRN------YGFVHMENEQVGREAIQNL 381
++IGN+S TTE L LF + G + + + +N + FV + + +A++ +
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYI 95
Query: 382 NGELVHGQAIKIE 420
+G ++ + I+++
Sbjct: 96 SGTILDDRPIRVD 108
>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1234
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 70 YIVTHVSIISNFIYPVYSLIFSEKYHRFRRC 162
+ TH +I S+ P+ ++ S++Y RF+ C
Sbjct: 979 FYFTHQTIGSSIGIPLLHILLSQQYFRFKAC 1009
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 27.1 bits (57), Expect = 7.5
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Frame = +1
Query: 208 GTGTFKIFIGNLSDKTTEADLRPLFEKYGTVVECDIVRNY--------GFVHMENEQVGR 363
G+ + + N+ +LR FE++G V + I R+Y FV +
Sbjct: 43 GSSHGSLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAG 102
Query: 364 EAIQNLNGELVHGQAIK-IEAAKSRKAPSTPTTK 462
EA +++N G+ I + A++SRK P K
Sbjct: 103 EAQRSMNRRSFAGREITVVVASESRKRPEEMRVK 136
>At1g55290.1 68414.m06316 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to GI:5924383 from [Daucus
carota]; contains PF03171 2OG-Fe(II) oxygenase
superfamily domain
Length = 361
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 265 DLRPLFEKYGTVVECDIVRNYGFVHMENEQVGREAIQNL 381
D+ L EK + CD +GF + N V E ++N+
Sbjct: 66 DISNLDEKSVSKAVCDAAEEWGFFQVINHGVSMEVLENM 104
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 406 AIKIEAAKSRKAPSTPTTKIFVGNLTDKTR 495
A ++A + R+AP TP T I LTDK R
Sbjct: 6 AATVQATRPRRAPRTPVTAI----LTDKRR 31
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Frame = +1
Query: 223 KIFIGNLSDKTTEADLRPLFEKYGTVVECDIV--------RNYGFVHMENEQVGREAIQ 375
KIF+ L T L F++YG + +C V + YGF+ ++ R A++
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNALK 187
>At1g73660.1 68414.m08530 protein kinase family protein contains
Pfam profile: PF00069 eukaryotic protein kinase domain
Length = 1030
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 405 GDQNRSGQEPEGAVDANH 458
GD G EP+G+ D+NH
Sbjct: 695 GDDGSGGHEPQGSGDSNH 712
>At1g52030.2 68414.m05870 myrosinase-binding protein, putative
(F-ATMBP) identical to SP|Q9SAV1 Myrosinase binding
protein-like f-AtMBP [Arabidopsis thaliana]; similar to
myrosinase binding protein GI:1711295 from [Brassica
napus]; contains Pfam PF01419: Jacalin-like lectin
domain; identical to cDNA myrosinase-binding
protein-like protein (MBP1.2) GI:6760446
Length = 642
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 311 ISSEITVSCTWKTNKSAAKPF 373
+ +E+ S T+KTNK ++PF
Sbjct: 576 VEAEVVTSLTFKTNKRTSQPF 596
>At1g52030.1 68414.m05869 myrosinase-binding protein, putative
(F-ATMBP) identical to SP|Q9SAV1 Myrosinase binding
protein-like f-AtMBP [Arabidopsis thaliana]; similar to
myrosinase binding protein GI:1711295 from [Brassica
napus]; contains Pfam PF01419: Jacalin-like lectin
domain; identical to cDNA myrosinase-binding
protein-like protein (MBP1.2) GI:6760446
Length = 642
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 311 ISSEITVSCTWKTNKSAAKPF 373
+ +E+ S T+KTNK ++PF
Sbjct: 576 VEAEVVTSLTFKTNKRTSQPF 596
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,782,618
Number of Sequences: 28952
Number of extensions: 212767
Number of successful extensions: 886
Number of sequences better than 10.0: 176
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -