Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30544
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6P936 Cluster: Secretion protein HlyD family protein; ...    34   1.7  
UniRef50_Q9LJ76 Cluster: En/Spm transposon protein-like; n=1; Ar...    34   2.2  
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    32   6.8  

>UniRef50_A6P936 Cluster: Secretion protein HlyD family protein;
           n=2; Alteromonadales|Rep: Secretion protein HlyD family
           protein - Shewanella sediminis HAW-EB3
          Length = 378

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = -1

Query: 159 GRAVVPTRADSHEVLP*FDQSI*LLTEILTAHFHLFSVVTKDTLRFLG 16
           GRA+V    D H+V   F   +     I T HFH  SV+ K  LR  G
Sbjct: 324 GRAIVLIELDDHDVKSAFPAGVAGQAAIYTEHFHHVSVIRKVLLRMQG 371


>UniRef50_Q9LJ76 Cluster: En/Spm transposon protein-like; n=1;
           Arabidopsis thaliana|Rep: En/Spm transposon protein-like
           - Arabidopsis thaliana (Mouse-ear cress)
          Length = 818

 Score = 33.9 bits (74), Expect = 2.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 212 TAALPFRPKRITASRQK*AGPWYLPVRTHTRSYHNL 105
           T  LP + K++  SR+  + PWY+ +R   R YH L
Sbjct: 357 TYILPSQAKQVFYSREDESSPWYVVMRAPPRGYHEL 392


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 11/13 (84%), Positives = 11/13 (84%)
 Frame = -2

Query: 149 WYLPVRTHTRSYH 111
           WYLP RTH RSYH
Sbjct: 572 WYLPARTHKRSYH 584


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 451,383,474
Number of Sequences: 1657284
Number of extensions: 8098331
Number of successful extensions: 12614
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12614
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)