Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30539
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IK06 Cluster: Putative uncharacterized protein; n=6; ...    33   3.9  
UniRef50_Q2GDA7 Cluster: FAD-binding domain protein; n=5; Ricket...    33   5.1  
UniRef50_Q0LPS1 Cluster: Proton-translocating NADH-quinone oxido...    32   6.8  

>UniRef50_Q8IK06 Cluster: Putative uncharacterized protein; n=6;
            Plasmodium|Rep: Putative uncharacterized protein -
            Plasmodium falciparum (isolate 3D7)
          Length = 1303

 Score = 33.1 bits (72), Expect = 3.9
 Identities = 25/80 (31%), Positives = 37/80 (46%)
 Frame = +3

Query: 258  CAYNYLHVYSR*IIFQMILLTDTVVRLCLLRRGSWIRSPHRANIYVMNMLLLFFWAFIIY 437
            C   Y+H+Y   +I  +ILL   ++    L   +WIR+P     YV  +L+      IIY
Sbjct: 1056 CKTYYIHIY---LIIYIILLD--LLTTYKLYTSNWIRNPLGFQTYVPFVLIKLLMNIIIY 1110

Query: 438  ICI*LNVYKYVYQSLVPIKQ 497
            I      YK + Q    IK+
Sbjct: 1111 IFYVFISYKNINQLHYDIKK 1130


>UniRef50_Q2GDA7 Cluster: FAD-binding domain protein; n=5;
           Rickettsiales|Rep: FAD-binding domain protein -
           Neorickettsia sennetsu (strain Miyayama)
          Length = 1243

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 417 KRATTCSSHKCLPDVGIESTTLGVTDRGAPPCQSVISFGKLF 292
           ++  TC S   LP+VG + +  G+  +G P  Q +    KL+
Sbjct: 242 RKKDTCRSGFSLPEVGYKKSAFGIIQKGCPLGQRISEMNKLY 283


>UniRef50_Q0LPS1 Cluster: Proton-translocating NADH-quinone
           oxidoreductase, chain M precursor; n=3; Chloroflexi
           (class)|Rep: Proton-translocating NADH-quinone
           oxidoreductase, chain M precursor - Herpetosiphon
           aurantiacus ATCC 23779
          Length = 565

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = +3

Query: 300 FQMILLTDTVVRLCLLRRGSWIRSPHRANIYVMNMLLLFFWAFIIYICI-*LNVYKYVYQ 476
           F ++ LT  +  +C+L      R  HR N+Y+  MLLL       ++ +  L ++ +   
Sbjct: 104 FPLVFLTTALTPVCILAA---FRIKHRQNVYLALMLLLESAMLGYFVSLNFLLLFLFWEF 160

Query: 477 SLVPIKQ*ILNWG 515
           SLVP+   I NWG
Sbjct: 161 SLVPMFFIINNWG 173


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 524,442,769
Number of Sequences: 1657284
Number of extensions: 10399536
Number of successful extensions: 20590
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20569
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)