Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30539
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   5.1  
SPCC1739.09c |cox13||cytochrome c oxidase subunit VIa|Schizosacc...    25   5.1  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.7  

>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 264 KHRADLMIALKLLSSTLKNLFKLPLP 187
           K + DL  ALK+L++   NLF    P
Sbjct: 269 KQKVDLASALKMLTTKYDNLFNTSFP 294


>SPCC1739.09c |cox13||cytochrome c oxidase subunit
           VIa|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 130

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 327 PCQSVISFGKLFIYCTHEDNCKHRAD 250
           P   + S    +IYC H+++ KH  D
Sbjct: 67  PALILASANAYYIYCKHQEHAKHVED 92


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 370 DRIHDPRRNRQRRTTVSVSN 311
           + IH+  R R+RRTT+S  N
Sbjct: 325 EAIHEECRQRKRRTTISRDN 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,922
Number of Sequences: 5004
Number of extensions: 44839
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)