Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30539
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53274| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.24 
SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         29   2.3  
SB_30536| Best HMM Match : fn3 (HMM E-Value=0.079)                     28   4.0  
SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)               28   4.0  
SB_56884| Best HMM Match : Amb_V_allergen (HMM E-Value=4.5)            27   6.9  
SB_56244| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_24615| Best HMM Match : CSE2 (HMM E-Value=3.1)                      27   9.2  
SB_17213| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_53274| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 622

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -2

Query: 428 KRPEKEQQHVHHINVCPMWGSNPRPSA--*QTEAHHRVSQ*YHLENYLSTVHMKIIVST 258
           KR EK  QH+HH +   +    PRP A    T  +  V + Y    Y+ T  + + +ST
Sbjct: 342 KRQEKSSQHMHHASEAQL---EPRPHAHLLDTRLNSAVEKGYSSAEYIKTYDIDVFLST 397


>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 348  RRGSWIRSPHRANIYVMNMLLLFFWAFI 431
            R GS+IR P+R  +Y    + L  W ++
Sbjct: 1746 RAGSFIRFPNRGKLYAKRSITLLAWVYV 1773


>SB_30536| Best HMM Match : fn3 (HMM E-Value=0.079)
          Length = 754

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 167 FSPPPSGGRGNLNKF-FKVDDSSFKAIIKSALCLQLSSC 280
           +S PPS G    +++  KVDD S   + KS L  +L+SC
Sbjct: 59  WSQPPSIGDATPDQYEIKVDDVSRDILDKSQLSYELASC 97


>SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)
          Length = 863

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -3

Query: 397 IT*MFARCGDRIHDPRRNRQRRTTVSVSNIIWKIIY 290
           I+  + R  D +HD RR R RR +VSV   +++  Y
Sbjct: 16  ISAFYYRHNDLLHDKRRTRLRRMSVSVYISVYQPYY 51


>SB_56884| Best HMM Match : Amb_V_allergen (HMM E-Value=4.5)
          Length = 167

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/56 (26%), Positives = 31/56 (55%)
 Frame = +3

Query: 216 KLTIAVLKQSLNRPCAYNYLHVYSR*IIFQMILLTDTVVRLCLLRRGSWIRSPHRA 383
           +L ++++K+  +RP A   +  YSR  +  + +   TV R  L+  G+++   +RA
Sbjct: 103 RLKLSIIKEPFHRPVAATVITCYSRKNVDMLKMHCMTVAR--LIMSGTFVSGKNRA 156


>SB_56244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 373 GDRIHDPRRNRQRRTTVSVSNII 305
           GDR+H+ R NRQ R  V++   +
Sbjct: 40  GDRLHENRLNRQERLEVAIDRAL 62


>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4247

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -1

Query: 339  RGAPPCQSVISFGKLFIYCTHEDNCKHRADLMIALKLLSSTLKNLFKLPLPPD 181
            RG  P     SF KL + CTH       AD ++AL  +    K       PP+
Sbjct: 1809 RGTTPRDDTDSFDKLRVICTH------LADTLVALTAIRPPDKGFLVTTTPPN 1855


>SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
 Frame = -1

Query: 426 TPRKRATT---CSSHKCLPDVGIESTTLG---VTDRGAPP 325
           TPR+++T    CS H C P  G    + G   V D   PP
Sbjct: 825 TPRRKSTELSRCSPHFCRPSAGFTPLSTGLSFVFDENIPP 864


>SB_24615| Best HMM Match : CSE2 (HMM E-Value=3.1)
          Length = 113

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 60  YIRRLSS*HLHRLKSFKKALKDSLKPLPLTAK 155
           Y++ L S  +  LKS  +AL   L+ LPLT K
Sbjct: 69  YVKSLES-EIRELKSKNRALSQRLEELPLTRK 99


>SB_17213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 321 QSVISFGKLFIYCTHEDNCKHRADLMIALKLLSSTLKNLFKLP 193
           +S+I F  L ++C H  N       +  L  L+S +KNL ++P
Sbjct: 509 ESIIGF--LDVFCVHVRNMLDIIQTLGQLSRLASDVKNLMRIP 549


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,267,610
Number of Sequences: 59808
Number of extensions: 337605
Number of successful extensions: 713
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)