Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30539
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99280-4|CAB16500.2|  162|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z70750-9|CAA94735.2|  317|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine re...    28   4.6  
Z81536-6|CAB04370.1|  352|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    27   8.0  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    27   8.0  

>Z99280-4|CAB16500.2|  162|Caenorhabditis elegans Hypothetical
           protein Y57G11B.2 protein.
          Length = 162

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = -1

Query: 324 CQSVISFGKLFIYCTHEDNCKHRADLMIALKLLSSTLKN----LFKLPLPPDGGGEN*FK 157
           CQS+ +  KL   C  +  CK R+D+ + +   +S L N    L   P  P+  G   F+
Sbjct: 64  CQSMGTDTKLLEVCKMDGKCKERSDIDVTVCCCTSDLCNLQDDLKPTPETPEVDGSTDFE 123

Query: 156 ILR*AVMVSMSLSE 115
                ++V+ S SE
Sbjct: 124 QNSTEILVTSSESE 137


>Z70750-9|CAA94735.2|  317|Caenorhabditis elegans Hypothetical
           protein C50F4.10 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 338 LSVTPRVVDSIPTSG-KHLCDEHVVALFLGVYYLYMYII 451
           L V   V+ +I   G +H CD   +  F G++Y+ M++I
Sbjct: 62  LKVEAFVLQTIAKRGSRHFCDIEDIGKFQGIHYIVMHMI 100


>AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform a protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/75 (21%), Positives = 36/75 (48%)
 Frame = +3

Query: 273 LHVYSR*IIFQMILLTDTVVRLCLLRRGSWIRSPHRANIYVMNMLLLFFWAFIIYICI*L 452
           LHV ++  +FQ+++    V + C     S I S  +   Y++  + +F+  F+I     +
Sbjct: 123 LHVITQ--VFQILISLLAVRKFCFHFYPSHIESVLKVQKYILKFIWIFYLLFVIKESTGI 180

Query: 453 NVYKYVYQSLVPIKQ 497
            +Y   +  ++  K+
Sbjct: 181 ILYVLKFSKMITTKE 195


>Z81536-6|CAB04370.1|  352|Caenorhabditis elegans Hypothetical
           protein F40D4.8 protein.
          Length = 352

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
 Frame = -1

Query: 408 TTCSSHKC--LPDVGIESTTLGVTDRGAPPCQSVISFGKLFIYCTHEDNCKHRADLM--- 244
           T C  + C  + D    STT+  T    P C +        +Y T  D    R  L    
Sbjct: 156 TICLPYACYFIYDYTAHSTTISETWELPPECANTSEPDTYTLYYTEYDESSFRISLFIDG 215

Query: 243 IALKLLSSTLKNLFKLPL 190
           I  KL+ S L  LF + L
Sbjct: 216 ILFKLIPSILLPLFTIVL 233


>Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical protein
            F40F11.2b protein.
          Length = 1607

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +2

Query: 68   SPIVLTPSPS*KLQKGSERLIETITAYRKILN---*FSPPPSGGRGNLNK 208
            +PI +TPSPS   ++ S ++ ++    +K+LN    F  P +G R  L++
Sbjct: 1201 TPIKMTPSPSESRKRRSAKIEDSPAQKKKLLNSGSSFVTPKNGLRAELDE 1250


>Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical protein
            F40F11.2a protein.
          Length = 1593

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = +2

Query: 68   SPIVLTPSPS*KLQKGSERLIETITAYRKILN---*FSPPPSGGRGNLNK 208
            +PI +TPSPS   ++ S ++ ++    +K+LN    F  P +G R  L++
Sbjct: 1187 TPIKMTPSPSESRKRRSAKIEDSPAQKKKLLNSGSSFVTPKNGLRAELDE 1236


>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 270  NCKHRADLMIALKLLSSTLKNLFKLPLP 187
            +C HRA  ++ +++LSS +K L    +P
Sbjct: 1133 SCSHRAICILVIEMLSSDIKYLSSFSIP 1160


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 270  NCKHRADLMIALKLLSSTLKNLFKLPLP 187
            +C HRA  ++ +++LSS +K L    +P
Sbjct: 1230 SCSHRAICILVIEMLSSDIKYLSSFSIP 1257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,222,617
Number of Sequences: 27780
Number of extensions: 258585
Number of successful extensions: 613
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)