Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30539
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   5.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.7  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 339 CLLRRGSWIRSPHRANIYV 395
           C +  GSW+ S    NI++
Sbjct: 183 CRINFGSWVHSGEEVNIFL 201


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 334 ASVCYAEGRGFDPHI-GQTFM 393
           A+V  A G GFD H+ G +F+
Sbjct: 13  AAVTSAGGHGFDAHLRGPSFV 33


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 334 ASVCYAEGRGFDPHI-GQTFM 393
           A+V  A G GFD H+ G +F+
Sbjct: 13  AAVTSAGGHGFDAHLRGPSFV 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,683
Number of Sequences: 438
Number of extensions: 3293
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)