Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30539
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34140.1 68414.m04235 polyadenylate-binding protein, putative...    27   9.9  
At1g06650.2 68414.m00705 2-oxoglutarate-dependent dioxygenase, p...    27   9.9  
At1g06650.1 68414.m00704 2-oxoglutarate-dependent dioxygenase, p...    27   9.9  

>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
           PABP, putative non-consensus splice donor TA at exon 1;
           similar to polyadenylate-binding protein
           (poly(A)-binding protein) from [Triticum aestivum]
           GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
           thaliana} SP|P42731; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 407

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 264 YNYLHVYSR*IIFQMILLTDTVVRLC-LLRRGSWIRSPHRANIYVMNML 407
           Y+ L VY+        L+ +  + +C  + RG W +S    N+YV N++
Sbjct: 79  YSDLSVYTACNFHNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLV 127


>At1g06650.2 68414.m00705 2-oxoglutarate-dependent dioxygenase,
           putative similar to 2A6 (GI:599622) and tomato ethylene
           synthesis regulatory protein E8 (SP|P10967); contains
           Pfam profile: PF00671 Iron/Ascorbate oxidoreductase
           family
          Length = 369

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 300 FQMILLTDTVVRLCLLRRGSWIRSPHRANIYVMNM 404
           F  +LL D +  L + R G W   PH +   ++N+
Sbjct: 246 FLTVLLPDQIEGLQVRREGHWFDVPHVSGALIINI 280


>At1g06650.1 68414.m00704 2-oxoglutarate-dependent dioxygenase,
           putative similar to 2A6 (GI:599622) and tomato ethylene
           synthesis regulatory protein E8 (SP|P10967); contains
           Pfam profile: PF00671 Iron/Ascorbate oxidoreductase
           family
          Length = 314

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 300 FQMILLTDTVVRLCLLRRGSWIRSPHRANIYVMNM 404
           F  +LL D +  L + R G W   PH +   ++N+
Sbjct: 246 FLTVLLPDQIEGLQVRREGHWFDVPHVSGALIINI 280


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,482,595
Number of Sequences: 28952
Number of extensions: 236859
Number of successful extensions: 490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)