Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30537
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   1.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   5.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   7.5  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   7.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.5  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 240 PDLLSYFAIVENESKARVKFNLM 308
           P+LL YFA +    K + + NL+
Sbjct: 830 PNLLRYFASIATNPKEQAQLNLL 852


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -3

Query: 220 QESRCWFISHSYFV 179
           +++R W I+HSYF+
Sbjct: 223 EQNRSWRITHSYFM 236


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 67  TISTSILPLKIKWVKD 114
           +++   LPL I W+KD
Sbjct: 633 SVTRGDLPLSISWLKD 648


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 52  NFRVYTISTSILPLKIKWVKDTTFTVNLNIYRANI*AQATPTLQNMNG 195
           +FR + +STSIL  K    ++T + + +   RA     ++ ++ + NG
Sbjct: 398 SFREFAVSTSILGDKKTAEENTDYFMPIGRPRAKDYGHSSGSVIDRNG 445


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 9/37 (24%), Positives = 14/37 (37%)
 Frame = +3

Query: 78  KHLAFKNKMGERYNIHSQLEHLQSKYIGTGHADTTKY 188
           K+    N +G R     +     S+Y  + H D   Y
Sbjct: 209 KYAISSNSLGSRSRSFQRTSSCHSRYEDSRHEDRNSY 245


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 216 SCCSYMGHPDLLSYFAI 266
           S CSYM H  L   F++
Sbjct: 339 SSCSYMAHEKLSYAFSV 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,489
Number of Sequences: 438
Number of extensions: 2305
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)