Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30537
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14342.1 68417.m02209 pre-mRNA splicing factor 10 kDa subunit...   120   4e-28
At3g23325.1 68416.m02942 splicing factor, putative similar to Sp...   119   1e-27
At1g70560.1 68414.m08123 alliinase C-terminal domain-containing ...    27   5.7  
At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containi...    27   9.9  
At3g48200.1 68416.m05259 expressed protein                             27   9.9  

>At4g14342.1 68417.m02209 pre-mRNA splicing factor 10 kDa subunit,
           putative similar to Splicing factor 3B subunit 10
           (SF3b10) (Pre-mRNA splicing factor SF3b 10 kDa subunit)
           (Swiss-Prot:Q9BWJ5) [Homo sapiens]; Conserved in
           Plasmodium, yeast, fly, mouse, human
          Length = 87

 Score =  120 bits (290), Expect = 4e-28
 Identities = 50/83 (60%), Positives = 67/83 (80%)
 Frame = +3

Query: 108 ERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENESKA 287
           +R+NI+SQLEHLQ+KY+GTGHAD +++EW +N  RDS  SY+GH  +LSYFAI ENES  
Sbjct: 5   DRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAENESIG 64

Query: 288 RVKFNLMERMLQPCGPPPEKPED 356
           R ++N M++ML PCG PPE+ E+
Sbjct: 65  RERYNFMQKMLLPCGLPPEREEE 87


>At3g23325.1 68416.m02942 splicing factor, putative similar to
           Splicing factor 3B subunit 10 (SF3b10) (Pre-mRNA
           splicing factor SF3b 10 kDa subunit) (Swiss-Prot:Q9BWJ5)
           [Homo sapiens]
          Length = 87

 Score =  119 bits (287), Expect = 1e-27
 Identities = 49/83 (59%), Positives = 67/83 (80%)
 Frame = +3

Query: 108 ERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENESKA 287
           +R+NI+SQLEHLQ+KY+GTGHAD +++EW +N  RDS  SY+GH  +LSYFAI ENES  
Sbjct: 5   DRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAENESIG 64

Query: 288 RVKFNLMERMLQPCGPPPEKPED 356
           R ++N M++ML PCG PPE+ ++
Sbjct: 65  RERYNFMQKMLLPCGLPPEREDE 87


>At1g70560.1 68414.m08123 alliinase C-terminal domain-containing
           protein contains Pfam profiles: PF04864 allinase
           C-terminal domain, PF04863 alliinase EGF-like domain
          Length = 391

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +3

Query: 156 IGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVEN 275
           +   H D T YE    +  D C   +   DL+SYF+ + N
Sbjct: 25  VNLDHGDPTAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTN 64


>At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 768

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +3

Query: 177 TTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENESKARVKFNLMERMLQPC 329
           T K E LMN H +S C    + + L  F   +  S  +++      ++  C
Sbjct: 27  TIKTEELMNDHINSLCKSNFYREALEAFDFAQKNSSFKIRLRTYISLICAC 77


>At3g48200.1 68416.m05259 expressed protein
          Length = 1088

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -1

Query: 273  FLRSQSNSTNPDDPCSCSKS 214
            F R +SNS  P DP SCSKS
Sbjct: 1029 FTRDRSNSKVPSDP-SCSKS 1047


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,299,987
Number of Sequences: 28952
Number of extensions: 168076
Number of successful extensions: 345
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)