Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30536
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    32   0.044
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   0.72 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   0.95 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   1.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   1.7  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.2  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   3.8  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   5.1  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   5.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   6.7  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    25   6.7  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    25   8.9  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   8.9  
SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    25   8.9  

>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 32.3 bits (70), Expect = 0.044
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +1

Query: 13  IPESTPXKPAA---AGDSSTDSPPLANTPSKEE 102
           +P STP KP+       SSTDSPP  +TPS  +
Sbjct: 401 LPPSTPSKPSTFVRPHSSSTDSPPSPSTPSNTQ 433


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 1    SSPAIPESTPXKPAAAGDSSTDSPPLANTPSKEEAPVVPA 120
            S+P +P+S+   P+A       S  + + P+   AP VPA
Sbjct: 1048 STPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPA 1087



 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 13   IPESTPXKPAAAGDSSTDSPPLANTPSKEEAPVVPAAKSA 132
            IP STP  P ++  + +  PP+   PS  E P +PA   A
Sbjct: 1045 IPTSTPPVPKSSSGAPSAPPPVP-APS-SEIPSIPAPSGA 1082


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.9 bits (59), Expect = 0.95
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 1   SSPAIPESTPXKPAAAGDSSTDSPPLANTPSKEEAPVVPA 120
           S+P++P + P  P           P+ANT S+  +   PA
Sbjct: 186 SAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPA 225



 Score = 26.6 bits (56), Expect = 2.2
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 1   SSPAIPESTPXKPAAAGDSSTDSPPLANTPSKEEAPVVPAA 123
           S+P  P   P  PA+A    + +PP+   PS    P  PAA
Sbjct: 142 SAPPRPSIPPPSPASAPPIPSKAPPI---PSSLPPPAQPAA 179


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +1

Query: 7    PAIPESTPXKPAAAGDSSTDSPPLANTPSKEEAPVVPAAKSAERRKPAG 153
            P IP+  P   A    S+   PP+A +  +       A+ SA    PAG
Sbjct: 1069 PQIPQPPPVSTALPSSSAVSRPPIATSAGRSS---TAASTSAPLTYPAG 1114


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
 Frame = +1

Query: 7   PAIP-ESTPXKPAAAGDSSTDSPPLANTPSKEEAPVVPAAKSAERRKPAG 153
           PAIP  S P  P     S T +PP+   PS   +       SA    P G
Sbjct: 393 PAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMG 442


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 34  KPAAAGDSSTDSPPLANTP-SKEEAPVVPAAKSAERRKP 147
           K AA  D + D+PP   TP S     +VP   S  +++P
Sbjct: 39  KQAALSDITPDTPPAFKTPYSSLPYNLVPQNSSTSKKRP 77


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 28  PXKPAAAGDSSTDSPPLANTPSKEEAPVVPAAKS 129
           P +P A+    T  PP  N PS   +  VP  ++
Sbjct: 114 PLEPIASSALGTVEPPTDNKPSASTSTAVPTTEA 147


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 37  PAAAGDSSTDSPPLANTPSKEEAPVVPAAKSAERRKPA 150
           P+A       +     TP  E  PV    +SAE +KP+
Sbjct: 411 PSAGAQVQKHNEEKVETPKPEAQPVSKPKESAEEQKPS 448


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 7   PAIPESTPXKPAAAGDSSTDSPPLANT 87
           P+IP + P  P+A   S +  PPL ++
Sbjct: 298 PSIPSTIPTIPSAYSASVSSQPPLTHS 324


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +1

Query: 1   SSPAIPESTPXKPAAAGDSSTDSP-PLANTPSKEEAPVVPAAKSAERRKP 147
           S+P I EST    +A+   S+ SP P  +T       + P   S+    P
Sbjct: 84  STPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTP 133



 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 22  STPXKPAAAGDSSTDSPPLANT 87
           STP  PA+   + T S PL +T
Sbjct: 314 STPPPPASTSSTGTSSSPLPST 335



 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 22  STPXKPAAAGDSSTDSPPLANT 87
           STP  PA+   + T S PL +T
Sbjct: 368 STPPPPASTSSTGTSSSPLLST 389


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +1

Query: 4   SPAIPESTPXKPAAAGDSSTDSPPLANTPSKEEAPVVP 117
           SPA P  T      A  ++T  PP+ N P       VP
Sbjct: 215 SPATPAPTSAANTPATIAATSIPPVPNVPLVGATTAVP 252


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 490 PSLQLFFWVLP*GQLRLGSARPQVCS 413
           P++ +F W+LP  Q+ +  A+P  CS
Sbjct: 375 PAIFIFMWILPQIQIIVILAQPLHCS 400


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 22  STPXKPAAAGDSSTDSPPLANTPSKEEAPVVPAAKSAERRKP 147
           S+P +P +   +    P +      EE+P V    S  RRKP
Sbjct: 535 SSPVQPTSYNRTLPPMPEVVAYKGDEESPRVSRNTSLARRKP 576


>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 4   SPAIPESTPXKPAAAGDSSTDSPPLANTPSKEEAPVVPAAKS 129
           SP   +++P KP+ +  S TD+   +  P+  + P    A S
Sbjct: 165 SPNPTQTSPGKPSTSESSQTDT---STRPANSQTPTTTRASS 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.304    0.122    0.337 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,144,401
Number of Sequences: 5004
Number of extensions: 14438
Number of successful extensions: 47
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)