Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30536
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.9  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   2.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   3.3  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    21   7.5  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   10.0 

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 54  ISGSRWFXWSRFWNSGTG 1
           +S + WF W    NSG G
Sbjct: 610 LSSAVWFAWGVLLNSGIG 627


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 12/48 (25%), Positives = 18/48 (37%)
 Frame = +1

Query: 13  IPESTPXKPAAAGDSSTDSPPLANTPSKEEAPVVPAAKSAERRKPAGK 156
           IP+  P  P    ++  ++ P  N P     P  P  +     KP  K
Sbjct: 217 IPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAKPEAK 264


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +1

Query: 25  TPXKPAAAGDSSTDSPPLANTPSKEEAPVVPAAKSA 132
           TP  P        DSP  +   S  E P  PA+ SA
Sbjct: 562 TPQPPQCPRFRKLDSPSDSGIESGTEKPDKPASSSA 597


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 124 WRPERRGLLLWTVCWLREGCRWSYLRQPLVXL 29
           +R +RRG + +T+  +RE  R  Y ++  + L
Sbjct: 133 YRSKRRGFVYYTMGQIREVARHFYHKELQIEL 164


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 11/45 (24%), Positives = 17/45 (37%)
 Frame = +1

Query: 13  IPESTPXKPAAAGDSSTDSPPLANTPSKEEAPVVPAAKSAERRKP 147
           IP+  P  P    ++  ++ P  N P     P  P  +     KP
Sbjct: 105 IPQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPPHPRLRREAKP 149


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 83  LAKGGLSVELSPAAAGXSGVDSGIAG 6
           +AKG  + E+SPA    +G+   I G
Sbjct: 68  VAKGAFTGEISPAMLLDNGIPWVILG 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.304    0.122    0.337 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,157
Number of Sequences: 438
Number of extensions: 961
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.0 bits)