Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30534
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26) 191 3e-49
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 49 2e-06
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 45 3e-05
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 44 6e-05
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_22047| Best HMM Match : Mito_carr (HMM E-Value=0) 40 0.001
SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31) 39 0.002
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.004
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.005
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.035
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.035
SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.035
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 34 0.080
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 33 0.14
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.14
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.18
SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 33 0.18
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 33 0.18
SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0) 32 0.24
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.32
SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2) 30 0.98
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 30 0.98
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 30 1.3
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0) 30 1.3
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23) 29 1.7
SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17) 29 1.7
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 29 1.7
SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_25940| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 29 2.3
SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_9851| Best HMM Match : Hint (HMM E-Value=1.30321e-43) 29 3.0
SB_48488| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_46119| Best HMM Match : Ank (HMM E-Value=9.8e-16) 28 4.0
SB_10272| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_51941| Best HMM Match : fn3 (HMM E-Value=2.1e-11) 28 5.3
SB_42679| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08) 27 6.9
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23) 27 6.9
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 27 6.9
SB_18294| Best HMM Match : Ctr (HMM E-Value=0.0092) 27 9.2
SB_41639| Best HMM Match : Retrotrans_gag (HMM E-Value=6.6) 27 9.2
SB_15258| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_21443| Best HMM Match : Mito_carr (HMM E-Value=2.8e-26)
Length = 205
Score = 191 bits (465), Expect = 3e-49
Identities = 93/161 (57%), Positives = 114/161 (70%)
Frame = +2
Query: 32 MFSSLLDAARNSPFRGPLSPAQCQSTVAPVAIEQTGGMAASAAVPTESCEFGSPKYFAXX 211
MFS + A+NS PLS A+C S V + + + ASAA SCEFGS KY+A
Sbjct: 1 MFSRYFETAKNSTLGDPLSVAKCPSDVR--SHRNSSRLMASAAGEQHSCEFGSAKYYALC 58
Query: 212 XXXXXXXXXXTHTAVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFI 391
THTAVVPLDLVKCR+QVD +KY ++VNGFK++++E+GVRGLA+GWAPTFI
Sbjct: 59 GFGGILSCGLTHTAVVPLDLVKCRIQVDPKKYGSMVNGFKITLKEDGVRGLARGWAPTFI 118
Query: 392 GYSMQGLCKFGFYEVFKVAYAGMLDDETAYTYRTFVYLAAS 514
GYSMQGL KFGFYEVFK+ Y ML +E +Y YRT +YLAAS
Sbjct: 119 GYSMQGLGKFGFYEVFKIMYGNMLGEEYSYLYRTSLYLAAS 159
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +2
Query: 260 PLDLVKCRLQV-DAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYEV 436
PLD+V+ RL + +KY ++N F R+EG+R +G+ PT IG F YE
Sbjct: 9 PLDMVRARLAITQKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISFFTYET 68
Query: 437 FKVAYAGMLDDETAYTYRTFVYLAAS 514
K A+ D + + + A +
Sbjct: 69 CKKAFGEFYDGKKPTPFHRLAFGACA 94
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 45.2 bits (102), Expect = 3e-05
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Frame = +2
Query: 260 PLDLVKCRLQVDAE----KYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGF 427
PLD+V+ R+Q++ KY + +GFKV VR EG GL KG P + + +F
Sbjct: 701 PLDVVRRRMQMERGEGMFKYSSTWDGFKVIVRSEGFIGLFKGMWPNLLKVAPTIGIQFAV 760
Query: 428 YEVFKVA-YAGM 460
YEV K A YA M
Sbjct: 761 YEVSKSAMYARM 772
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = +2
Query: 281 RLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYEVFKVAYA 454
++QV KY V R+EG+ G KG + +F YE FK A
Sbjct: 583 QIQVTNAKYSGVGGTLAKIYRDEGLYGYFKGNGTNIVRIVPYTAVQFAAYEEFKKGIA 640
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 44.4 bits (100), Expect = 6e-05
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Frame = +2
Query: 248 TAVVPLDLVKCRLQ-----VDAEK-YKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQG 409
TAV P+DLVK R+Q ++AEK YKN ++ F VR EG GL +G P +G S +
Sbjct: 929 TAVYPIDLVKTRMQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLLGVSPEK 988
Query: 410 LCK 418
K
Sbjct: 989 AIK 991
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 41.9 bits (94), Expect = 3e-04
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +2
Query: 242 THTAVVPLDLVKCRLQVDAEKYK--NVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLC 415
+ TA PLD +K LQV A +V+GFK+ +RE G++ L +G I + +
Sbjct: 150 SRTATAPLDRLKVLLQVQASSTNRFGIVSGFKMMLREGGIKSLWRGNGANVIKIAPESGI 209
Query: 416 KFGFYEVFK 442
KF YE K
Sbjct: 210 KFFAYEKAK 218
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +2
Query: 242 THTAVVPLDLVKCRLQV-DAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCK 418
+ T++ PL+++K RL + +Y+ +++ V ++EG+R +G P+ +G
Sbjct: 244 SQTSIYPLEVLKTRLAIRKTGQYRGLLHAASVIYQKEGIRSFYRGLFPSLLGIIPYAGID 303
Query: 419 FGFYEVFKVAYAGMLDDETA 478
YE K Y +++A
Sbjct: 304 LAVYETLKNFYLNYHKNQSA 323
Score = 33.9 bits (74), Expect = 0.080
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +2
Query: 251 AVVPLDLVKCRLQVDAEKY-----KNVVNGFKVSVREEGVRGLAKGWAPTFI 391
A PL LV+ RLQ A + N+V+ + + E+G +GL +G AP F+
Sbjct: 344 ASYPLSLVRTRLQAQAREKGGGQGDNMVSVLRKIITEDGFKGLYRGLAPNFL 395
>SB_22047| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 421
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 248 TAVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTF 388
T P D++K R+ + Y+ V F ++V EG+ L KGW PT+
Sbjct: 316 TISTPADVIKTRIMNNPSGYQGAVECFMLAVHREGLLSLYKGWLPTW 362
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Frame = +2
Query: 260 PLDLVKCRLQVDAEKY--------KNVVNGFKVSVREEGVRGLAKGWAP 382
P DLVK ++Q++ + + + F+ V + G RGL KGW P
Sbjct: 151 PTDLVKVQMQMEGRRLSFYPISSVRGTFHAFRNIVDKYGFRGLWKGWLP 199
>SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31)
Length = 233
Score = 39.1 bits (87), Expect = 0.002
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +2
Query: 260 PLDLVKCRLQVDAEK--YKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYE 433
P +L+K RLQV + Y ++ F +R EGVRGL KG+ + G G C YE
Sbjct: 35 PANLIKIRLQVQRKTTLYNGSLDAFTKVIRTEGVRGLYKGYLVSCAGL-FAGQCYITTYE 93
Query: 434 VFK 442
+ +
Sbjct: 94 LVR 96
>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 200
Score = 38.3 bits (85), Expect = 0.004
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Frame = +2
Query: 242 THTAVVPLDLVKCRLQV-----DAEKYKNVVNGFKVSVREEGV-RGLAKGWAPTFIGYSM 403
+ T PLD+V+ R+Q+ D KY +N F E+G+ RGL +G + ++
Sbjct: 120 SQTLAYPLDVVRRRMQLAGTVADGHKYSTCINTFISVYTEDGIRRGLYRGLSINYLRVCP 179
Query: 404 QGLCKFGFYEVFK 442
Q F YEV K
Sbjct: 180 QVAVMFAVYEVVK 192
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 37.9 bits (84), Expect = 0.005
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Frame = +2
Query: 242 THTAVVPLDLVKCRLQV-----DAEKYKNVVNGFKVSVREEGVR-GLAKGWAPTFIGYSM 403
+ T PLD+V+ R+Q+ D KY +N +++G+R GL +G + ++
Sbjct: 186 SQTIAYPLDVVRRRMQLAGAVPDGHKYNTCINTLVNVYKDDGIRRGLYRGLSINYLRVCP 245
Query: 404 QGLCKFGFYEVFK 442
Q FG YEV K
Sbjct: 246 QVAIMFGVYEVTK 258
Score = 35.1 bits (77), Expect = 0.035
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Frame = +2
Query: 260 PLDLVKCRL--QVDAEK-YKNVVNGFK-VSVREEGVRGLAKGWAPTFIGYSMQGLCKFGF 427
PLD+V+ RL QV ++ Y + + +SV+E G + L KG+ PT + ++ GF
Sbjct: 84 PLDMVRSRLAFQVAQDQGYTTITQTIRCISVKEGGPKALYKGFVPTLL--TIVPAMGIGF 141
Query: 428 YEVFKVAYAGMLDDETAYT 484
Y +F+ A L+ A+T
Sbjct: 142 Y-MFETMKAYFLETRIAFT 159
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 37.5 bits (83), Expect = 0.006
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = +2
Query: 242 THTAVVPLDLVKCRLQVDAEK----YKNVVNGFKVSVREEGVRGLAKGWAPTFI 391
+ TA PLD+V+ R+Q+ + YK+ ++ F V+ EG RGL KG P +
Sbjct: 175 SQTATYPLDVVRRRMQMKGIRADFAYKSTLHAFSSIVKLEGFRGLYKGMWPNIL 228
Score = 34.3 bits (75), Expect = 0.060
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +2
Query: 242 THTAVVPLDLVKCRLQVDAE--KYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLC 415
+ T+V PL+ VK LQ+ + K+K V+ +EEG+ G KG I
Sbjct: 48 SRTSVSPLERVKILLQIQVKNPKFKGVLPTLIQIGKEEGILGYFKGNGTNVIRIFPYSAV 107
Query: 416 KFGFYEVFKVAYA 454
+F YE +K A
Sbjct: 108 QFAAYEEYKKGIA 120
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 35.1 bits (77), Expect = 0.035
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Frame = +2
Query: 260 PLDLVKCRLQVDAEK--------------YKNVVN-GFKVSVREEGVRGLAKGWAPTFIG 394
P+++VK R+Q+D E YK ++ G REEGVRGL +G P +
Sbjct: 26 PIEVVKIRMQLDNELGSKHNSKDIFRERYYKGLIRTGLSRVYREEGVRGLYRGIFPALLR 85
Query: 395 YSMQGLCKFGFYEVFKVAYAGMLDDETAYTYRTFV 499
++ + G YE K G D +A ++ V
Sbjct: 86 QAIYSSTRLGAYEPIK-NLLGATDSTSAALWKKIV 119
Score = 31.1 bits (67), Expect = 0.56
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +2
Query: 260 PLDLVKCRLQV----DAEKYKNVVNGFKVSVREEGVRGLAKGWAPT 385
P DLVK R Q + YKN+ + F ++EG GL G PT
Sbjct: 134 PTDLVKIRFQAVKIGETIPYKNMFHAFYKIAKKEGFLGLWTGMKPT 179
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 7/74 (9%)
Frame = +2
Query: 260 PLDLVKCRLQVDAEK-------YKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCK 418
P+D+V+ R + Y+ ++ +VR EG+ L KG+ P + + +
Sbjct: 231 PVDIVRTRFMTQPKDTKGRPLVYQGTLDCIYKTVRHEGILALYKGFFPNWTRTGLDTIII 290
Query: 419 FGFYEVFKVAYAGM 460
F YE + YAG+
Sbjct: 291 FFVYERLR-RYAGL 303
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 35.1 bits (77), Expect = 0.035
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = +2
Query: 254 VVPLDLVKCRLQVDAEK-----YKNVVNGFKVSVREEGVRGLAKGWAPTFIG 394
V P +++K RL V YK + + K +REEG+ L KG P+F+G
Sbjct: 170 VYPCEVIKTRLTVQHVNKSNAHYKGMRHALKTILREEGILALYKGVTPSFLG 221
>SB_25734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1938
Score = 35.1 bits (77), Expect = 0.035
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 281 RLQVDA-EKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYEV 436
R + DA +K GF ++ +EEG L K T YS++GL KF FYEV
Sbjct: 909 RTKPDATDKVYGEFQGFNITYKEEGGGTLYKTADHTKRSYSIKGLKKFTFYEV 961
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 33.9 bits (74), Expect = 0.080
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Frame = +2
Query: 260 PLDLVKCRLQVDAEKYKNVVN--GFKVSVR----EEGVRGLAKGWAPTFIGYSMQGLCKF 421
PLD+V+ RL V +++ N G ++R EEG+RGL KG P+ + + +
Sbjct: 48 PLDVVRARLTVQDMSTRSISNYTGIVSALRRIHIEEGIRGLYKGLVPSLVSIAPFLGVQQ 107
Query: 422 GFYEVFKVAYAGMLDDETAYTYRTFVYLAA 511
Y++ K+ LD A TF+ A
Sbjct: 108 SVYDIMKLR---ALDSAFAANSGTFLVCGA 134
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 33.1 bits (72), Expect = 0.14
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Frame = +2
Query: 242 THTAVVPLDLVKCRLQ----VDAE-KYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQ 406
T A +P+D+ K R+Q +D + +YK ++ VR EGV L KG+ P +
Sbjct: 107 TTVASMPVDIAKTRIQNMRIIDGKPEYKGTMDVLARIVRNEGVFALWKGFTPYYFRIGPH 166
Query: 407 GLCKFGFYE 433
+ F F E
Sbjct: 167 TVLTFIFLE 175
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 33.1 bits (72), Expect = 0.14
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +2
Query: 242 THTAVVPLDLVKCRLQVD----AEKYKNVVNGFKVSVREEGVRGLAKGWAPT 385
T + PLD VKC LQ++ Y V+ + RE GVRG+ KG + T
Sbjct: 151 TSFVLTPLDRVKCILQIEKAFGGSSYGGPVDCLRRIYREAGVRGVYKGISVT 202
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 32.7 bits (71), Expect = 0.18
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Frame = +2
Query: 260 PLDLVKCRLQVDAEKYKNVVNGFKVSVR----EEGVRGLAKGWAPTFI 391
P + +KC LQV+A + +G V+ EEGVRG+ +G PT I
Sbjct: 140 PAERIKCILQVEAGASGSTQSGPYAIVKRIYAEEGVRGIFRGLPPTMI 187
Score = 32.3 bits (70), Expect = 0.24
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 7/45 (15%)
Frame = +2
Query: 260 PLDLVKCRLQV-------DAEKYKNVVNGFKVSVREEGVRGLAKG 373
PLDL+K RLQ + +K ++ F +VR EG+RGL KG
Sbjct: 40 PLDLLKVRLQAMNQVKPGETAPFKGAMDCFMKTVRLEGLRGLYKG 84
>SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 32.7 bits (71), Expect = 0.18
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -1
Query: 264 RGTTAVWVRPHDRTPPTPQRAKYLGD--PNSQDSVGTAADAAMPPVCSIATGATVD 103
+G V VRPHD+ P Q+++Y+ D NS + + A P V S +D
Sbjct: 32 QGVRLVAVRPHDQVSPRQQQSQYIHDLLNNSYPIIPKVGEPASPYVSSPRESVLID 87
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 32.7 bits (71), Expect = 0.18
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 11/55 (20%)
Frame = +2
Query: 254 VVPLDLVKCRLQVDA-----------EKYKNVVNGFKVSVREEGVRGLAKGWAPT 385
++P D++K R+QV ++Y V + F+ ++EEG GL KG AP+
Sbjct: 47 ILPFDIIKKRIQVQGFEEARQSFGRVQQYDGVKDCFRTILKEEGAMGLFKGLAPS 101
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 32.7 bits (71), Expect = 0.18
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -1
Query: 264 RGTTAVWVRPHDRTPPTPQRAKYLGD--PNSQDSVGTAADAAMPPVCSIATGATVD 103
+G V VRPHD+ P Q+++Y+ D NS + + A P V S +D
Sbjct: 1613 QGVRLVAVRPHDQVSPRQQQSQYIHDLLNNSYPIIPKVGEPASPYVSSPRESVLID 1668
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 32.7 bits (71), Expect = 0.18
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +2
Query: 254 VVPLDLVKCRLQVDAEK-----YKNVVNGFKVSVREEGVRGLAKGWAPTFI 391
V P +++K RL V YK + + K +REEG+ L KG P+F+
Sbjct: 439 VYPCEVIKTRLTVQHVNKSNAHYKGMRHALKTILREEGILALYKGVTPSFL 489
>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
Length = 1829
Score = 32.3 bits (70), Expect = 0.24
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -1
Query: 234 HDRTPPTPQRAKYLGDPNSQDSVGTAADAAMPPVCSIATGATVDWHWAGDSG 79
H P P RA L P + S G+ A+ A PP +ATG + + SG
Sbjct: 811 HSLLHPPPGRASQL--PLQEQSSGSRAEEASPPPALVATGPSASYRLPNASG 860
>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 1024
Score = 31.9 bits (69), Expect = 0.32
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +2
Query: 245 HTAVVPLDLVKCRLQVDAEKYKNVVNGFKV---SVREEGVRGLAKGWAPTFIGYSMQGLC 415
HT PL +K RLQ++ + + FK+ + + EG+R +G +++G S + +
Sbjct: 849 HTVTNPLWFIKTRLQLENQGGTR-ASAFKIVSMAYKAEGIRAFYRGLTASYVGIS-ETVV 906
Query: 416 KFGFYEVFK 442
F YE K
Sbjct: 907 HFTIYERLK 915
>SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2)
Length = 454
Score = 30.3 bits (65), Expect = 0.98
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = -1
Query: 411 RPCIEYPM--KVGAHPLAR-PRTPSSRTDTLKPFTTFLYFSASTWRRHFTRSRGTTAVWV 241
RP + P G PL P PS +P T + + +R T S ++ W+
Sbjct: 157 RPLVTVPWVPSPGYRPLGTVPWVPSPG---YRPLGTVPWVPSPGYRPMGTVSWVQSSGWL 213
Query: 240 RPHDRTPPTPQRAKY 196
RP+ R PP P+ KY
Sbjct: 214 RPNGRKPPNPRPLKY 228
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 30.3 bits (65), Expect = 0.98
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +2
Query: 248 TAVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGW-APTFI 391
TA PLD +K RLQ A ++ +V+ EGVRGL KG AP +
Sbjct: 85 TAGQPLDTIKVRLQ--ASFGAGPLDMLARTVKTEGVRGLYKGMLAPVLV 131
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = +2
Query: 251 AVVPLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGW 376
A+ P++++K RLQ+ Y+ V++ +EEG+R + +
Sbjct: 14 AMNPIEVIKQRLQMYGSPYRGVIHCATSVFKEEGIRAFYRSY 55
>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 612
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 260 PLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYE 433
P D+VK RLQ++ Y + + G+ GL +G P + ++ + YE
Sbjct: 543 PADVVKTRLQMNPYMYPSNRAAVVAIIEAGGIEGLFRGLVPRTVRRTLMSAMAWTIYE 600
>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
Length = 434
Score = 29.5 bits (63), Expect = 1.7
Identities = 28/107 (26%), Positives = 39/107 (36%), Gaps = 1/107 (0%)
Frame = -1
Query: 408 PCIEYPMKVGAHPLARPRTPSSRTDTLKPFTTFLYF-SASTWRRHFTRSRGTTAVWVRPH 232
P I Y H +AR TP++ TT Y AST + T + T PH
Sbjct: 64 PYITYASTTHPH-IARASTPTTHPYITHASTTHHYIVHASTTHPYITYASTPTTHPHIPH 122
Query: 231 DRTPPTPQRAKYLGDPNSQDSVGTAADAAMPPVCSIATGATVDWHWA 91
TP T + P + + A+ P + A+ T H A
Sbjct: 123 ASTPTTHPHITHASTPTTHPHITHASTPTTHPHITHASTPTTHPHIA 169
>SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17)
Length = 187
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Frame = +2
Query: 260 PLDLVKCRLQVDAEK---------YKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGL 412
PL++VK R+Q+ E Y+NV + + EG+ + KG P I +
Sbjct: 24 PLEVVKTRMQLQGELKSRGTYSVYYRNVFHASYTIAKYEGILAMQKGLFPALIYQVIMNG 83
Query: 413 CKFGFYEV 436
+ G Y++
Sbjct: 84 TRLGSYQI 91
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +2
Query: 260 PLDLVKCRLQVDAE----KYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGL 412
P D++K R+Q D +YK +++ S +EEG+ +G PT + +Q L
Sbjct: 152 PFDVIKSRIQADGNLGKFRYKGMMDCALQSYKEEGMIVFTRGIWPTLLRGFLQVL 206
>SB_402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 730
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 186 PNSQDSVGTAADAAMPPVCSIATGATVDWHWAGD-SGPRNGEFRAASSNEENIIM 25
P Q T A PPV +G+ D W GD S P+ + R+ N +M
Sbjct: 398 PQPQKPPATRPSATPPPVTGDESGSDYDEDWGGDWSEPKPTQSRSIVGEMRNDLM 452
>SB_25940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 100 PVDGRARGYRADRWHGGVCCG 162
P +G+ RG+R GGVCCG
Sbjct: 91 PREGQIRGFRFVHISGGVCCG 111
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Frame = +2
Query: 260 PLDLVKCRLQVDAEK--------YKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLC 415
P+DL K ++QV + Y+NV + + G+RG +G + T +
Sbjct: 221 PIDLFKSKMQVQIIRAQSGAPIQYRNVFHAGYTIAQTYGIRGCYQGLSATLVRNIPANGF 280
Query: 416 KFGFYEVFK 442
FGFYE K
Sbjct: 281 FFGFYEFTK 289
>SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +2
Query: 260 PLDLVKCRLQVDAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFY 430
P D +K ++Q KN ++ + ++EG +GL G P+ + F FY
Sbjct: 29 PFDTIKVKMQTFPSMSKNALDCGIKTFKQEGFKGLYAGTIPSLAANIAENSFLFLFY 85
>SB_46203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 28.7 bits (61), Expect = 3.0
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 98 CQSTVAPVAIEQTGGMAASAAVPTES 175
C ST PV +QT A+SA VPT S
Sbjct: 154 CLSTARPVTTQQTKKPASSAFVPTTS 179
>SB_9851| Best HMM Match : Hint (HMM E-Value=1.30321e-43)
Length = 493
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = -1
Query: 231 DRTPPTPQRAKYLGDPNSQDSV--GTAADAAMPPVCSIATGATVDWHWAGDSGPRNGEFR 58
D TP +A DP + S+ + A +C V + W G+S R+ FR
Sbjct: 424 DGTPNVLDKASMFIDPRDEVSIRDNSGRVALQVVICVAKLHVVVHFAWTGESNSRDFHFR 483
Query: 57 A 55
A
Sbjct: 484 A 484
>SB_48488| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 362 LAKGWAPTFIGYSMQGLCKFGFYEVFKV 445
L KGW T ++M G K+G E+ K+
Sbjct: 123 LLKGWGATSFEHAMIGAAKYGHIEIVKL 150
>SB_46119| Best HMM Match : Ank (HMM E-Value=9.8e-16)
Length = 374
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = -1
Query: 300 SASTWRRHFTRSRGTTAVWVRPHDRTPPTPQRAKYLGDPN--SQDSVGTAADAAMPPVCS 127
SAS + RH R T V P P+RA+ G N S+DS + + + P V S
Sbjct: 70 SASAYPRHVLHRRSVTLPIVLPTIALQDEPKRARSAGYTNQQSKDSSSSTSRTSSPSVRS 129
>SB_10272| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +1
Query: 43 VARCGAELSVPWPTIARPVPVDGRARGYRADRWHGGVCCGTHGVL 177
+ RCG + W +P P++GR R W G C +L
Sbjct: 338 IRRCGTH-APGWMVGRQPSPIEGRVRRTVCFNWAGNCCKWRQNIL 381
>SB_51941| Best HMM Match : fn3 (HMM E-Value=2.1e-11)
Length = 155
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 281 RLQVDA-EKYKNVVNGFKVSVREEGVRGLAKGWAPTFIGYSMQGLCKFGFYEV 436
R + DA +K GF ++ +EEG L K T + GL KF +YEV
Sbjct: 78 RTKPDATDKIYGEFQGFNITYKEEGGGTLYKTTNHTTRSCIITGLKKFTYYEV 130
>SB_42679| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08)
Length = 537
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 272 VKCRLQVDAEKYKNVVNGFKVSVREE 349
V C L + E+Y++VVN KV V+ +
Sbjct: 301 VSCSLVLTYERYRSVVNSVKVKVKSK 326
>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
Length = 1189
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +3
Query: 450 TPVCWTTRPPTLTVP-SCTW 506
TP C +T PPT P SC W
Sbjct: 947 TPECCSTTPPTAQCPSSCAW 966
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +2
Query: 251 AVVPLDLVKCRLQV-----DAEKYKNVVNGFKVSVREEGVRGLAKGWAPTFI 391
AV PLD++K RLQ+ Y +++ K EG+ KG P I
Sbjct: 222 AVNPLDVIKTRLQLLNRPQGEPNYNGIIDCAKKIYSNEGLAAFYKGAVPRMI 273
>SB_18294| Best HMM Match : Ctr (HMM E-Value=0.0092)
Length = 267
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 380 PTFIGYSMQGLCKFGFYEVFK-VAYAGMLDDETA 478
P+ +GYS++ C FGF K V+ + ++DD T+
Sbjct: 29 PSPVGYSIRVSCSFGFIVTLKNVSGSLVIDDMTS 62
>SB_41639| Best HMM Match : Retrotrans_gag (HMM E-Value=6.6)
Length = 324
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/50 (22%), Positives = 19/50 (38%)
Frame = -1
Query: 288 WRRHFTRSRGTTAVWVRPHDRTPPTPQRAKYLGDPNSQDSVGTAADAAMP 139
W + F+ G W R P + R +L P++ +S +P
Sbjct: 43 WEKDFSFDFGHPVAWSRKRSSRPASRSRGSFLKSPDNPESYPMVQSIPVP 92
>SB_15258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 264
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 79 PTIARPVPVDGRARGYRADRW 141
P + R +DGR +GYR +W
Sbjct: 3 PRVHRSYALDGRCKGYRFKKW 23
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,421,235
Number of Sequences: 59808
Number of extensions: 305764
Number of successful extensions: 1028
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -