Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30534
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    34   0.001
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    34   0.001
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.46 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.5  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   7.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   10.0 

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
 Frame = +2

Query: 191 PKYFAXXXXXXXXXXXXTHTAVVPLDLVKCRLQV--------DAEKYKNVVNGFKVSVRE 346
           P  FA            + T V P++ VK  LQV        + ++YK +++ F    +E
Sbjct: 7   PVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKE 66

Query: 347 EGVRGLAKGWAPTFIGYSMQGLCKFGFYEVFKVAYAGMLDDETAYTYRTFVYLAAS 514
           +G     +G     I Y       F F + +K  + G +D  T +  R FV   AS
Sbjct: 67  QGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQF-LRYFVGNLAS 121


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%)
 Frame = +2

Query: 191 PKYFAXXXXXXXXXXXXTHTAVVPLDLVKCRLQV--------DAEKYKNVVNGFKVSVRE 346
           P  FA            + T V P++ VK  LQV        + ++YK +++ F    +E
Sbjct: 7   PVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKE 66

Query: 347 EGVRGLAKGWAPTFIGYSMQGLCKFGFYEVFKVAYAGMLDDETAYTYRTFVYLAAS 514
           +G     +G     I Y       F F + +K  + G +D  T +  R FV   AS
Sbjct: 67  QGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQF-LRYFVGNLAS 121


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.0 bits (52), Expect = 0.46
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 279 HFTRSRGTTAVWVRPHDRTP 220
           HF  S G TA+W+ P +R+P
Sbjct: 58  HFIES-GITAIWLSPINRSP 76


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 81  GPRNGEFRAASSNEEN 34
           GPRNG+ +  SS  EN
Sbjct: 210 GPRNGKRKRKSSTIEN 225


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 168 RSPVNLDRLNISLFAELVVFC 230
           R+P NL  +N+++   L++FC
Sbjct: 84  RTPSNLFVINLAISNFLMMFC 104


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 168 RSPVNLDRLNISLFAELVVFC 230
           R+P NL  +N+++   L++FC
Sbjct: 50  RTPSNLFVINLAISDFLMMFC 70


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 182  IHRTPWVPQQTPP 144
            + RT W  QQ PP
Sbjct: 1345 LERTAWRQQQPPP 1357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,197
Number of Sequences: 438
Number of extensions: 2958
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)