Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30530
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 130 9e-32
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 65 5e-12
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 58 6e-10
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 55 5e-09
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 44 1e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 34 0.011
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 33 0.025
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 32 0.059
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 130 bits (315), Expect = 9e-32
Identities = 61/76 (80%), Positives = 64/76 (84%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
SGGT MYPGIADRMQKEI AL PS+ +APP RKYSVWIGGSILASLS FQ MWISK
Sbjct: 300 SGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISK 359
Query: 334 EEYDESGPGIVXRKCF 287
+EYDESGPGIV RKCF
Sbjct: 360 QEYDESGPGIVYRKCF 375
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 65.3 bits (152), Expect = 5e-12
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYS--VWIGGSILASLSXFQXMWI 341
+GGT + PG+++R+Q E+ L + A S VW GGSILASL FQ +W+
Sbjct: 350 TGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWV 409
Query: 340 SKEEYDESG 314
SK+EYDE G
Sbjct: 410 SKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 58.4 bits (135), Expect = 6e-10
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Frame = -3
Query: 511 GGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPX--RKYSVWIGGSILASLSXFQXMWIS 338
GGT + G + R+Q E+ L P + + R Y+ W+GGSIL+SL F +WIS
Sbjct: 354 GGTSLMQGFSLRLQNELSKLYPGSRLKIHASGHVVERSYASWLGGSILSSLGTFHQLWIS 413
Query: 337 KEEYDESGP---GIVXRKC 290
++EY+E G ++ ++C
Sbjct: 414 RQEYEEHGSDRLALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 55.2 bits (127), Expect = 5e-09
Identities = 27/76 (35%), Positives = 43/76 (56%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
SGG+ + G +R E+ A+ A P R ++ W+GGSILASLS F+ + I+
Sbjct: 305 SGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITS 364
Query: 334 EEYDESGPGIVXRKCF 287
EEY ++ ++ R+ F
Sbjct: 365 EEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 44.4 bits (100), Expect = 1e-05
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 12/79 (15%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIA-----------PPXRKYSVWIGGSILAS 368
SGG+ MY G+ R++KEI L A P R+++V+IGG++LA
Sbjct: 300 SGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLAD 359
Query: 367 -LSXFQXMWISKEEYDESG 314
++ MW+SK E++E G
Sbjct: 360 IMAQNDHMWVSKAEWEEYG 378
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 34.3 bits (75), Expect = 0.011
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
+GG PG+ R+++E+ ++ P W G S + F+ +++
Sbjct: 641 TGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTR 700
Query: 334 EEYDESGP 311
EEY E GP
Sbjct: 701 EEYLEKGP 708
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 33.1 bits (72), Expect = 0.025
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = -3
Query: 511 GGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISKE 332
GG +PG R+ E+ +L P+ P W S + L + I++
Sbjct: 327 GGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRS 385
Query: 331 EYDESGPGIVXRK 293
EY E G I+ RK
Sbjct: 386 EYSEHGANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 31.9 bits (69), Expect = 0.059
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 409 RKYSVWIGGSILASLSXFQXMWISKEEYDESGPGIVXR 296
++ +VW GGS+LA F +K +Y+E G I R
Sbjct: 382 QRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,404,922
Number of Sequences: 5004
Number of extensions: 18342
Number of successful extensions: 31
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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