Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30530
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)              129   2e-30
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)             128   4e-30
SB_56628| Best HMM Match : Actin (HMM E-Value=0)                      126   1e-29
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)             125   2e-29
SB_56| Best HMM Match : Actin (HMM E-Value=0)                         125   2e-29
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)              124   3e-29
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)                112   2e-25
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   8e-06
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)                 42   3e-04
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)                  33   0.11 
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.56 
SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   5.3  

>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score =  129 bits (311), Expect = 2e-30
 Identities = 61/76 (80%), Positives = 63/76 (82%)
 Frame = -3

Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
           SGGT MYPG+ADRMQKEI AL PST     IAPP RKYSVWIGGSILASLS FQ MWISK
Sbjct: 274 SGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 333

Query: 334 EEYDESGPGIVXRKCF 287
           +EYDESGP IV RKCF
Sbjct: 334 QEYDESGPAIVHRKCF 349


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score =  128 bits (308), Expect = 4e-30
 Identities = 61/76 (80%), Positives = 62/76 (81%)
 Frame = -3

Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
           SGGT MYPGIADRMQKEI AL P T     IAPP RKYSVWIGGSILASLS FQ MWISK
Sbjct: 263 SGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 322

Query: 334 EEYDESGPGIVXRKCF 287
           +EYDESGP IV RKCF
Sbjct: 323 QEYDESGPAIVHRKCF 338


>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score =  126 bits (304), Expect = 1e-29
 Identities = 60/76 (78%), Positives = 62/76 (81%)
 Frame = -3

Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
           SGG+ MYPGIADRMQKEI AL P T     IAPP RKYSVWIGGSILASLS FQ MWISK
Sbjct: 301 SGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 360

Query: 334 EEYDESGPGIVXRKCF 287
           +EYDESGP IV RKCF
Sbjct: 361 QEYDESGPSIVHRKCF 376


>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score =  125 bits (301), Expect = 2e-29
 Identities = 59/76 (77%), Positives = 62/76 (81%)
 Frame = -3

Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
           SGG+ MYPGIADRMQKEI +L P T     IAPP RKYSVWIGGSILASLS FQ MWISK
Sbjct: 301 SGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 360

Query: 334 EEYDESGPGIVXRKCF 287
           +EYDESGP IV RKCF
Sbjct: 361 QEYDESGPSIVHRKCF 376


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score =  125 bits (301), Expect = 2e-29
 Identities = 59/76 (77%), Positives = 62/76 (81%)
 Frame = -3

Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
           SGG+ MYPGIADRMQKEI +L P T     IAPP RKYSVWIGGSILASLS FQ MWISK
Sbjct: 300 SGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 359

Query: 334 EEYDESGPGIVXRKCF 287
           +EYDESGP IV RKCF
Sbjct: 360 QEYDESGPSIVHRKCF 375


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score =  124 bits (300), Expect = 3e-29
 Identities = 59/76 (77%), Positives = 62/76 (81%)
 Frame = -3

Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
           SGG+ M+PGIADRMQKEI AL P T     IAPP RKYSVWIGGSILASLS FQ MWISK
Sbjct: 300 SGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 359

Query: 334 EEYDESGPGIVXRKCF 287
           +EYDESGP IV RKCF
Sbjct: 360 QEYDESGPSIVHRKCF 375


>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
          Length = 149

 Score =  112 bits (269), Expect = 2e-25
 Identities = 54/76 (71%), Positives = 59/76 (77%)
 Frame = -3

Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
           SGG+ M+PGIADRMQKEI  L  ++     IAPP RKYSVWIGGSILASLS FQ MWI+K
Sbjct: 74  SGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAK 133

Query: 334 EEYDESGPGIVXRKCF 287
           EEY E GP IV RKCF
Sbjct: 134 EEYHEYGPPIVHRKCF 149


>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 36.7 bits (81), Expect(2) = 8e-06
 Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = -3

Query: 418 PPXRKYSVWIGGSILAS-LSXFQXMWISKEEYDESG 314
           PP RK+ V++GG++LA  +      W++++EY+E G
Sbjct: 364 PPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399



 Score = 29.9 bits (64), Expect(2) = 8e-06
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 514 SGGTXMYPGIADRMQKEIXAL 452
           SGG+ MYPG+  R+++EI  L
Sbjct: 304 SGGSTMYPGLPSRLEREIKQL 324


>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
          Length = 543

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = -3

Query: 409 RKYSVWIGGSILASLSXFQXMWISKEEYDESGPGIVXRKCF 287
           ++Y+VW GGS+LAS   F  +  +K +YDE GP I     F
Sbjct: 300 QRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340


>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
          Length = 240

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = -3

Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIA---PPXRKYSVWIGGSILASL 365
           +GG  +  G  +R+ +E+ +  P +     I+      ++++ WIGGSILASL
Sbjct: 178 TGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILASL 230


>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 9/73 (12%)
 Frame = -3

Query: 511 GGTXMYPGIADRMQKEIXALXPS--------TXXXXXIAPPXR-KYSVWIGGSILASLSX 359
           GGT M PG   R+ +EI  L  S                PP     + W+GG+I  SL  
Sbjct: 85  GGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGGAIFGSLEV 144

Query: 358 FQXMWISKEEYDE 320
                 ++E Y +
Sbjct: 145 LADRSTTRERYQQ 157


>SB_42882| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1973

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +3

Query: 378 MDPPIHTEYFLSGGAMILILMVEGXRAXISFCILSAIPGYMXVPPD 515
           +DPP+  +Y L+GG  ++   ++       FCI       +  PP+
Sbjct: 758 LDPPLENKYNLNGGQQVIQSTLQIQSLFFPFCIFQGF--VVPTPPE 801


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,131,876
Number of Sequences: 59808
Number of extensions: 166116
Number of successful extensions: 218
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)