Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30530
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 122 1e-28
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 122 1e-28
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 122 1e-28
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 122 1e-28
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 121 3e-28
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 121 3e-28
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 117 5e-27
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 117 5e-27
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 112 2e-25
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 102 2e-22
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 92 2e-19
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 81 3e-16
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 69 2e-12
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 58 4e-09
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 50 7e-07
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 46 2e-05
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 39 0.002
At5g56180.1 68418.m07008 actin-related protein, putative (ARP8) ... 36 0.012
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 30 0.80
At5g43500.2 68418.m05318 expressed protein 28 3.2
At5g43500.1 68418.m05319 expressed protein 28 3.2
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 27 7.5
At5g07240.1 68418.m00826 calmodulin-binding family protein conta... 27 9.9
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 122 bits (294), Expect = 1e-28
Identities = 57/76 (75%), Positives = 61/76 (80%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
SGG+ M+PGIADRM KEI AL PS+ +APP RKYSVWIGGSILASLS FQ MWISK
Sbjct: 302 SGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK 361
Query: 334 EEYDESGPGIVXRKCF 287
EYDESGP IV RKCF
Sbjct: 362 SEYDESGPSIVHRKCF 377
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 122 bits (294), Expect = 1e-28
Identities = 57/76 (75%), Positives = 61/76 (80%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
SGGT M+PGIADRM KEI AL PS+ +APP RKYSVWIGGSILASLS FQ MWI+K
Sbjct: 302 SGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAK 361
Query: 334 EEYDESGPGIVXRKCF 287
EYDESGP IV RKCF
Sbjct: 362 AEYDESGPSIVHRKCF 377
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 122 bits (294), Expect = 1e-28
Identities = 57/76 (75%), Positives = 61/76 (80%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
SGGT M+PGIADRM KEI AL PS+ +APP RKYSVWIGGSILASLS FQ MWI+K
Sbjct: 302 SGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAK 361
Query: 334 EEYDESGPGIVXRKCF 287
EYDESGP IV RKCF
Sbjct: 362 AEYDESGPSIVHRKCF 377
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 122 bits (294), Expect = 1e-28
Identities = 57/76 (75%), Positives = 61/76 (80%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
SGGT M+PGIADRM KEI AL PS+ +APP RKYSVWIGGSILASLS FQ MWI+K
Sbjct: 302 SGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAK 361
Query: 334 EEYDESGPGIVXRKCF 287
EYDESGP IV RKCF
Sbjct: 362 AEYDESGPSIVHRKCF 377
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 121 bits (292), Expect = 3e-28
Identities = 57/76 (75%), Positives = 61/76 (80%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
SGGT M+ GIADRM KEI AL PS+ +APP RKYSVWIGGSILASLS FQ MWISK
Sbjct: 302 SGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK 361
Query: 334 EEYDESGPGIVXRKCF 287
EYDE+GPGIV RKCF
Sbjct: 362 AEYDEAGPGIVHRKCF 377
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 121 bits (292), Expect = 3e-28
Identities = 57/76 (75%), Positives = 61/76 (80%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
SGGT M+ GIADRM KEI AL PS+ +APP RKYSVWIGGSILASLS FQ MWISK
Sbjct: 302 SGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISK 361
Query: 334 EEYDESGPGIVXRKCF 287
EYDE+GPGIV RKCF
Sbjct: 362 AEYDEAGPGIVHRKCF 377
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 117 bits (281), Expect = 5e-27
Identities = 55/76 (72%), Positives = 59/76 (77%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
SGGT M+ GI DRM KEI AL PS+ +APP RKYSVWIGGSILASLS FQ MWI+K
Sbjct: 302 SGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAK 361
Query: 334 EEYDESGPGIVXRKCF 287
EYDESGP IV RKCF
Sbjct: 362 AEYDESGPSIVHRKCF 377
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 117 bits (281), Expect = 5e-27
Identities = 55/76 (72%), Positives = 59/76 (77%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
SGGT M+ GI DRM KEI AL PS+ +APP RKYSVWIGGSILASLS FQ MWI+K
Sbjct: 302 SGGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAK 361
Query: 334 EEYDESGPGIVXRKCF 287
EYDESGP IV RKCF
Sbjct: 362 AEYDESGPSIVHRKCF 377
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 112 bits (269), Expect = 2e-25
Identities = 52/76 (68%), Positives = 57/76 (75%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
SGGT M+PGIADRM KEI AL P + +APP RKYSVW+GGSILASLS F MWI+K
Sbjct: 303 SGGTTMFPGIADRMNKEINALAPPSMKIKVVAPPERKYSVWVGGSILASLSSFAPMWITK 362
Query: 334 EEYDESGPGIVXRKCF 287
EYDE G IV RKCF
Sbjct: 363 AEYDEQGGAIVHRKCF 378
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 102 bits (244), Expect = 2e-22
Identities = 47/76 (61%), Positives = 56/76 (73%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
SGGT M+ GI +RM KEI AL + +APP RKYSVWIGGSILASLS ++ MWI+K
Sbjct: 254 SGGTTMFRGIEERMTKEINALAAANMRIKIVAPPERKYSVWIGGSILASLSTYEQMWITK 313
Query: 334 EEYDESGPGIVXRKCF 287
EY+E+GP IV KCF
Sbjct: 314 AEYEENGPAIVHTKCF 329
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 91.9 bits (218), Expect = 2e-19
Identities = 43/75 (57%), Positives = 52/75 (69%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
+GGT M GI +RM KE+ AL PS+ + PP + SVWIGGSILASLS F MWI+K
Sbjct: 291 TGGTTMLHGIKERMTKELNALVPSSMKVKVVVPPESECSVWIGGSILASLSTFHQMWITK 350
Query: 334 EEYDESGPGIVXRKC 290
+EY+E G IV RKC
Sbjct: 351 DEYEEHGAAIVHRKC 365
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 81.4 bits (192), Expect = 3e-16
Identities = 40/60 (66%), Positives = 45/60 (75%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
SGGT M+ GIADRM KEI AL PS+ +APP RKYSVWIGGSILASLS FQ + I +
Sbjct: 302 SGGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVKIDQ 361
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 68.5 bits (160), Expect = 2e-12
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAP---PXRKYSVWIGGSILASLSXFQXMW 344
+GGT + +R++K++ P + +A R++SVWIGGSILASL FQ MW
Sbjct: 363 AGGTSSMQQLKERLEKDLIEESPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMW 422
Query: 343 ISKEEYDESGPGIVXRKC 290
SK EY+E G + RKC
Sbjct: 423 FSKSEYEEHGASYIQRKC 440
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 58.0 bits (134), Expect = 4e-09
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Frame = -3
Query: 511 GGTXMYPGIADRMQKEIX----ALXPSTXXXXXIAPPXR-KYSVWIGGSILASLSXFQXM 347
GGT G R QKE A+ P+ P YS W+GG+ILA + Q
Sbjct: 284 GGTTSMTGFESRFQKEANLCSSAIRPTLVKPPEYMPENLGMYSAWVGGAILAKVVFPQNQ 343
Query: 346 WISKEEYDESGPGIVXRKCF 287
++K +YDE+GP +V RKCF
Sbjct: 344 HVTKADYDETGPSVVHRKCF 363
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 50.4 bits (115), Expect = 7e-07
Identities = 24/76 (31%), Positives = 39/76 (51%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
+GG+ ++P + +R++ E+ L P VW GGS+LAS F+ M ++K
Sbjct: 345 TGGSTLFPQLKERLEGELRPLVPDHFDVKITTQEDPILGVWRGGSLLASSPDFESMCVTK 404
Query: 334 EEYDESGPGIVXRKCF 287
EY+E G R+ F
Sbjct: 405 AEYEELGSARCRRRFF 420
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 12/79 (15%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIA-----------PPXRKYSVWIGGSILAS 368
SGG+ MYPG+ R++KEI T PP RK+ V++GG++LA
Sbjct: 301 SGGSTMYPGLPSRLEKEIQDRYLDTVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAG 360
Query: 367 -LSXFQXMWISKEEYDESG 314
+ WI++E+Y E G
Sbjct: 361 IMKDAPEFWINREDYMEEG 379
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 38.7 bits (86), Expect = 0.002
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = -3
Query: 415 PXRKYSVWIGGSILASLSXFQXMWISKEEYDESGPGI 305
P ++++VW GGS+L+S F +KEEY+E G I
Sbjct: 380 PVQRFAVWFGGSVLSSTPEFFASCRTKEEYEEYGASI 416
>At5g56180.1 68418.m07008 actin-related protein, putative (ARP8)
strong similarity to actin-related protein 8A (ARP8)
[Arabidopsis thaliana] GI:21427473; contains Pfam
profile PF00022: Actin; supporting cDNA
gi|21427470|gb|AF507916.1|
Length = 471
Score = 36.3 bits (80), Expect = 0.012
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIA--PPXRKYSVWIGGSILASLSXFQXMW- 344
+GG+ PG+++R+++E+ PS+ PP + W G ++++LS F W
Sbjct: 398 TGGSACLPGLSERLERELQDHLPSSISNGIRVIPPPYGVDTSWHGAKLISNLSIFPGPWC 457
Query: 343 ISKEEY 326
I+++++
Sbjct: 458 ITRKQF 463
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 30.3 bits (65), Expect = 0.80
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = -3
Query: 514 SGGTXMYPGIADRMQKEIXALXPSTXXXXXIAPPXRKYSVWIGGSILASLSXFQXMWISK 335
+GG + PG+ +R++ I + P + W G S A+ F +K
Sbjct: 644 TGGCSLLPGMNERLECGIRMIRPCGSPINVVRAMDPVLDAWRGASAFAANLNFLGNAFTK 703
Query: 334 EEYDESG 314
+YDE G
Sbjct: 704 MDYDEKG 710
>At5g43500.2 68418.m05318 expressed protein
Length = 584
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = -3
Query: 511 GGTXMYPGIADRMQKEIX-ALXPSTXXXXXIAPPXR---KYSVWIGGSILASLSXFQXMW 344
GG + G+ +++ + A+ P+ P R ++ W GG+IL L + W
Sbjct: 490 GGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEPQFVTWKGGAILGILDFGREAW 549
Query: 343 ISKEEYDESG 314
I + ++ +G
Sbjct: 550 IERHQWMVNG 559
>At5g43500.1 68418.m05319 expressed protein
Length = 596
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = -3
Query: 511 GGTXMYPGIADRMQKEIX-ALXPSTXXXXXIAPPXR---KYSVWIGGSILASLSXFQXMW 344
GG + G+ +++ + A+ P+ P R ++ W GG+IL L + W
Sbjct: 502 GGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEPQFVTWKGGAILGILDFGREAW 561
Query: 343 ISKEEYDESG 314
I + ++ +G
Sbjct: 562 IERHQWMVNG 571
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 165 MALDXMFSSQVSLGTTY*RXRSXLGRAQHHTAPGSR 272
+++D FSS S G +Y R S GR+Q +P R
Sbjct: 166 VSVDWAFSSGPSGGESYRRKNSRYGRSQRSRSPRRR 201
>At5g07240.1 68418.m00826 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 401
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 449 ALDHQDQDHRSPRXEVLRMDRW 384
A+DH +HRSP +D+W
Sbjct: 205 AMDHHHNNHRSPMGSSRLLDQW 226
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,616,395
Number of Sequences: 28952
Number of extensions: 110114
Number of successful extensions: 200
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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