Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30528
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    54   1e-09
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    51   6e-09
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    51   6e-09
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   0.26 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   2.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   7.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   7.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   7.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.7  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 53.6 bits (123), Expect = 1e-09
 Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
 Frame = +2

Query: 131 AQRARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVF 310
           +++A   + ++ + +F++L  + + ++ D + E     G+Y+IRQG  GD F++I  G  
Sbjct: 206 SRQAEYTDFLKSVPIFKNLPEETLIKISDVLEETFYNNGDYIIRQGARGDTFFIISRGQV 265

Query: 311 DVLVTGDDR-VEKVVHTYEGSGSFGELALMYNMPRAASVRA 430
            V +   D   EK + T      FGE AL  +  R A++ A
Sbjct: 266 RVTIKQPDTPEEKYIRTLSKGDFFGEKALQGDDLRTANIIA 306



 Score = 47.2 bits (107), Expect = 1e-07
 Identities = 32/110 (29%), Positives = 49/110 (44%)
 Frame = +2

Query: 122 KSDAQRARLAEAVRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIEN 301
           K D  R  +  A+      ++L+  Q+++            G  +IR+GD G   YV+E 
Sbjct: 85  KRDRSRELIKAAILANDFMKNLELTQIRRDRGLHVSCSFSAGSTIIREGDVGSIVYVMEE 144

Query: 302 GVFDVLVTGDDRVEKVVHTYEGSGSFGELALMYNMPRAASVRAQTAGALW 451
           G  +V   G     K + T       GELA++YN  R A++ A T   LW
Sbjct: 145 GKVEVSRDG-----KYLSTLAPGKVLGELAILYNCKRTATITAATDCQLW 189


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 51.2 bits (117), Expect = 6e-09
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
 Frame = +2

Query: 158 VRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDR 337
           V  +  F + D+  +  V+  +  +  +PG+ +I++G  G   Y I+ G+ D+++   + 
Sbjct: 451 VASVPFFANADSNFVSDVVTKLRYEVFQPGDIIIKEGTIGSKMYFIQEGIVDIVMANGE- 509

Query: 338 VEKVVHTYEGSGS-FGELALMYNMPRAASVRAQT 436
               V T    GS FGE+ L+ N  R ASVRA+T
Sbjct: 510 ----VATSLSDGSYFGEICLLTNARRVASVRAET 539


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 51.2 bits (117), Expect = 6e-09
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
 Frame = +2

Query: 158 VRGILLFRSLDAQQMQQVLDAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFDVLVTGDDR 337
           V  +  F + D+  +  V+  +  +  +PG+ +I++G  G   Y I+ G+ D+++   + 
Sbjct: 419 VASVPFFANADSNFVSDVVTKLRYEVFQPGDIIIKEGTIGSKMYFIQEGIVDIVMANGE- 477

Query: 338 VEKVVHTYEGSGS-FGELALMYNMPRAASVRAQT 436
               V T    GS FGE+ L+ N  R ASVRA+T
Sbjct: 478 ----VATSLSDGSYFGEICLLTNARRVASVRAET 507


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 446 ERRRSGPVQMPPAACCTSGPVRQTNRNL 363
           E  +S  +  PP  C  SG + +T +NL
Sbjct: 304 EMNKSKSITEPPKNCADSGSIWETGKNL 331


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 410 RAASVRAQTAGALWGHGPPHVSFAXCSRA 496
           RAA ++ +    ++   PPHV+    SRA
Sbjct: 745 RAADMKRRNGALIYNILPPHVAAYFLSRA 773


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = -1

Query: 427 PYRCRPRHVVHQGQFAKRTGTFVC 356
           P  CRPRH +        T   VC
Sbjct: 519 PSACRPRHEIRSTDVIPGTQEHVC 542


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 340 DAVVSGDQDVENAVLDDVE 284
           DA++SG+ D +N    D++
Sbjct: 52  DAILSGEYDYKNNYPSDID 70



 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 215 DAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFD 313
           D M     E GE +I   +  D+F+ + +  FD
Sbjct: 200 DTMVYIADEKGEGLIVYHNSDDSFHRLTSNTFD 232


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 340 DAVVSGDQDVENAVLDDVE 284
           DA++SG+ D +N    D++
Sbjct: 52  DAILSGEYDYKNNYPSDID 70



 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 215 DAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFD 313
           D M     E GE +I   +  D+F+ + +  FD
Sbjct: 200 DTMVYIADEKGEGLIVYHNSDDSFHRLTSNTFD 232


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 340 DAVVSGDQDVENAVLDDVE 284
           DA++SG+ D +N    D++
Sbjct: 52  DAILSGEYDYKNNYPSDID 70



 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 215 DAMFEKRSEPGEYVIRQGDDGDNFYVIENGVFD 313
           D M     E GE +I   +  D+F+ + +  FD
Sbjct: 200 DTMVYIADEKGEGLIVYHNSDDSFHRLTSNTFD 232


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -2

Query: 282 LSPSSPCLITYSPGSDLFSNIASRTCCICCASRERNSSMPRTASARRA 139
           LS S+P   +  PG+   + + S+   +   S    SS   TAS+R +
Sbjct: 146 LSSSAPTGSSCGPGAAAAAALLSKRRSVSECSLGTASSTSSTASSRNS 193


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = -1

Query: 469 VWRSMAPQSAGGLGPYRCR 413
           VW S  P   G +  + CR
Sbjct: 472 VWNSWMPSIRGAIQQWTCR 490


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 221 MFEKRSEPGEYVIRQGDDGDNFYVIENGVF 310
           MF      GE+++   D GD+ +V   G +
Sbjct: 153 MFTVNKYVGEHLLMTVDAGDSMFVHTFGAY 182


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 124  VGRTESPSR*GGPGH 168
            + R E+PSR  G GH
Sbjct: 1917 IERNEAPSRQTGSGH 1931


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 194 QQMQQVLDAMFEKRSEPGEYVIRQGDD 274
           QQ Q+      E+R  P E  +  G+D
Sbjct: 168 QQQQRQQQRQEERRLRPDEIKVEVGED 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,279
Number of Sequences: 438
Number of extensions: 3005
Number of successful extensions: 19
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)