Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30527
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   2.8  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   3.7  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    21   4.9  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   8.6  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   8.6  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 268 LPHCQSSFPPTTPASVQRK-PLSSKLFPSLPKFQRVLLKSSTMYTS 402
           +P  Q + P       Q K PLSS  +PS+    ++L+ S  M  S
Sbjct: 1   MPLLQETTPKRDMLDSQEKTPLSSVSYPSMFTPSQLLMASHLMAAS 46



 Score = 21.4 bits (43), Expect = 4.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 83  HGKKHYDAQSHQRPPGQQSSPRETVATHQGQRWLRVH 193
           H K H    + +RP   +   R+ V     +R LRVH
Sbjct: 177 HLKTHMRLHTGERPYRCEHCDRQFVQVANLRRHLRVH 213


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 190 NTKPTLPLMCGNSFSRAGLL 131
           N KP +  +CG S++R   L
Sbjct: 246 NQKPNVCRICGKSYARPSTL 265


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 83  HGKKHYDAQSHQRPPGQQSSPRETVATHQGQRWLRVH 193
           H K H    + +RP   +   R+ V     +R LRVH
Sbjct: 24  HLKTHMRLHTGERPYRCEHCDRQFVQVANLRRHLRVH 60


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/22 (31%), Positives = 9/22 (40%)
 Frame = -3

Query: 307 PVLWAGMTTDNGAMAPGRAGAW 242
           P+ W     D+G   PG    W
Sbjct: 264 PIRWVAKLWDSGLRKPGVGVFW 285


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 278 QWGNGTGTSW 249
           Q+GNG  TSW
Sbjct: 274 QFGNGLETSW 283


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,383
Number of Sequences: 336
Number of extensions: 3236
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)