Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30527
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 220 9e-59
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 51 1e-07
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 29 0.41
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 1.3
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 1.3
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 1.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.7
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 26 2.9
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 2.9
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 3.8
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 3.8
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.1
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 25 5.1
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 25 5.1
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.9
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 8.9
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 220 bits (538), Expect = 9e-59
Identities = 102/171 (59%), Positives = 133/171 (77%)
Frame = +3
Query: 3 FIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHIKGNVG 182
F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +++ P LE+LLP ++GNVG
Sbjct: 26 FVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELERLLPVVRGNVG 85
Query: 183 FVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKI 362
FVFT DL EVR+ ++ N + APARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI
Sbjct: 86 FVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKI 145
Query: 363 SKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 515
++GTIEI +DVH++ KVG SEATLLNMLNISPF+YG+ V +YD G +
Sbjct: 146 TRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNV 196
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 50.8 bits (116), Expect = 1e-07
Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 21/182 (11%)
Frame = +3
Query: 3 FIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAI-----KDHLDNNPALEKLLPHI 167
+I N+ + +++IR +GS I MGK +M KA+ ++H +N L KLL
Sbjct: 41 WIFDVTNMRNTYLKRIRDDWKGSRI-FMGKTKVMAKALGHTPEEEHAENVSKLTKLL--- 96
Query: 168 KGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVIPA----HNTGLGPEKTSF 332
G VG +FT EV E+ VQ AR GA+AP + VIPA G P +
Sbjct: 97 HGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDI 155
Query: 333 F---------QALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNI--SPFSYG 479
+ L +PT + G + ++ D + G ++ + + LL + I + F G
Sbjct: 156 LLTHTLEPQVRQLGMPTVLKNGVVTLLADFPLCTEGQQLDSRQTRLLKLFGITAAEFKVG 215
Query: 480 LV 485
L+
Sbjct: 216 LL 217
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.1 bits (62), Expect = 0.41
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 79 CSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLAS 186
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 1.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 145 RAGLLSRWSLMALRIIVFFPMSTILEPR 62
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 223 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 98
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 385 MISIVPFEILVGMERAWKKEVFSGPRPVLWAGMTTDNGAMAP 260
+IS P + L+G+ AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 1.7
Identities = 25/99 (25%), Positives = 43/99 (43%)
Frame = +1
Query: 16 PITWARNRCSRSVSRYVAPVSCSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLASCSP 195
P+T S SV PV+ S T+ + P +T T + NC TS + L + +P
Sbjct: 490 PLTTTNCTTSTSVPYTSTPVTSS-NYTISSSTPVTSTPVT---TTNCT-TSTSVLYTSTP 544
Query: 196 AETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPAS 312
++ + TNC T + + P+ + +TP +
Sbjct: 545 VTSTPLATTNC-TTSTSVPYTSTPVTSSNYTISSSTPVT 582
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 2.9
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = -3
Query: 319 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 149
+G PV + + G++ P AGAW L N L T + +NT P PL G F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194
Query: 148 SRAGL 134
S L
Sbjct: 195 SEEEL 199
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 2.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -3
Query: 238 LFSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRIIVFFPMST 77
LFSN + R + R+ T L+ GN++ + W+L+A I F +T
Sbjct: 1512 LFSNCICRDNITLSRIGTNCMQQLLSGNAYRFE--VKDWNLVADMFIELFKETT 1563
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +1
Query: 223 NCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLKS 384
+ +R++ R L+ P +S PP TPA+ + + ++P+ R++L++
Sbjct: 79 SAFRSRYRGSLLNRNSPSLRSLSPPATPATPRSRIEGESQTSAIPQTDRLILEN 132
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 292 PPTTPASVQRKPLSSKLFPSLPKFQRVLLKSST 390
PPTT + + +P FQ++LLK ST
Sbjct: 309 PPTTRDPIYLGTMLRLFAEKIPVFQKILLKPST 341
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 25.4 bits (53), Expect = 5.1
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +1
Query: 268 LPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLK 381
L HC + P A Q KPL S+ + SL KF+ LK
Sbjct: 532 LSHCFLNDPK---AFAQLKPLISQFYESLHKFKNFHLK 566
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 392 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGNDD*QWG 270
IVD NS + R + L ++G L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.4 bits (53), Expect = 5.1
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +1
Query: 181 ASCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPK 360
A + E + + R++ + + P + + PTT +R LS++ SL K
Sbjct: 131 AKKAKTEAPVEAANKSLRSRKKTPEIAAPA-NIEPEVAPTTKTPKKRAALSNEEKQSLKK 189
Query: 361 FQRVLL 378
FQ +L
Sbjct: 190 FQSAML 195
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 382 SSTMYTS*SPVTRLELLKPPFST 450
+STMY S P + KPP+ T
Sbjct: 90 ASTMYASPPPSSNYNTAKPPYQT 112
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 24.6 bits (51), Expect = 8.9
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -3
Query: 355 VGMERAWKKEVF-SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSL-SRTSTRSPRVN-- 188
+G + +W F S P+P G+T D+ + PG+ +++F + ++ + P N
Sbjct: 679 IGGDVSWGASTFQSKPQPSFSFGLTLDDKSNTPGK--NFSIFGKTAETQVEQKKPENNVL 736
Query: 187 TKP 179
TKP
Sbjct: 737 TKP 739
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,430,836
Number of Sequences: 5004
Number of extensions: 53100
Number of successful extensions: 185
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -