Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30527
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 217 4e-57
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.035
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 32 0.24
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059) 30 1.3
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59) 30 1.3
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 2.3
SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38) 28 4.0
SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9) 28 4.0
SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10) 28 5.3
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 28 5.3
SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5) 27 6.9
SB_57025| Best HMM Match : Fascin (HMM E-Value=0) 27 6.9
SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6) 27 6.9
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7) 27 9.2
SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1) 27 9.2
SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12) 27 9.2
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 27 9.2
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34) 27 9.2
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 217 bits (530), Expect = 4e-57
Identities = 101/142 (71%), Positives = 121/142 (85%)
Frame = +3
Query: 3 FIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHIKGNVG 182
F+VG DNVGS+QMQ IR SLRG VLMGKNTM+RKAI+ HL+NNP LEKLLPHIKGN+G
Sbjct: 10 FLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKLLPHIKGNIG 69
Query: 183 FVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKI 362
FVFT+ DL +VR ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI
Sbjct: 70 FVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFFQALAIPTKI 129
Query: 363 SKGTIEIINDVHILKPGDKVGA 428
++GTIEIINDVH++K +K+ A
Sbjct: 130 ARGTIEIINDVHLIKKDEKLKA 151
>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 35.1 bits (77), Expect = 0.035
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = +3
Query: 90 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 206
K T++RK +K HLDN P L K LP + G + + + GDL
Sbjct: 168 KVTIVRKELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 32.3 bits (70), Expect = 0.24
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -2
Query: 392 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGNDD*QWG 270
I+D NS + R K+LEERG L+ +GV GG + ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184
>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
Length = 765
Score = 29.9 bits (64), Expect = 1.3
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +1
Query: 190 SPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQR 369
S + TS ++ WR K L + L SS P +TPAS+ ++ L PSL Q
Sbjct: 561 SLSPTSESAMLQNWRQKLERPLTTLKLNQPDSS-PASTPASIPESANNTPLHPSLSSKQE 619
Query: 370 VLLKSS 387
+ S
Sbjct: 620 TNVPKS 625
>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
Length = 2053
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 424 PTLSPGFKMCTSLMISIVPFEILVGMERAWKKEVFSGPR 308
P P F+ C +L+ ++ ++ M RAW+KEV S R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQY---MRRAWRKEVISSQR 1878
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +3
Query: 231 ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 404
E ++ +PA +P S+ TGL P S Q LS+ T + ++ D+
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128
Query: 405 KPGDK 419
PG K
Sbjct: 2129 TPGKK 2133
>SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1332
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = +1
Query: 106 AKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQS 285
+K +TWT + +RN T ++ L +P L N + Q +PV + +C++
Sbjct: 92 SKARSSTWTRTRNARNLIDTQQSQLEMNNPQH--LHRTYNFSMMNNVRQPIPVLVNNCRA 149
Query: 286 SFPPTTPASVQRKPLSSKLFP 348
+ S ++ SS L P
Sbjct: 150 NDKLVESQSKRKSARSSNLIP 170
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 298 WAGMTTDNGAMAPGRAGAWTLFSNSL 221
W+ T D PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 217 VTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASV 315
V +C R PVP PH ++S PT P SV
Sbjct: 2 VVSCPRLFLDPMPAPVPRPHARASASPTHPTSV 34
>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
Length = 509
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -3
Query: 235 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 125
FS+S + T KP +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500
>SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9)
Length = 907
Score = 28.3 bits (60), Expect = 4.0
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%)
Frame = +1
Query: 124 TWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPV------PLPHCQS 285
T TT P + H + + C + VTN + + ++V V P S
Sbjct: 338 TTTTSHPLHHV-HATIKCESPCYELQKVTFDVTNPFTSGGEFRVVLVEAQSAFPGSGSSS 396
Query: 286 SFPPTTPASVQRKPLSSKL---FPSLPKFQRVLLKSSTMYTS*SPVTRLELLKPPFST 450
+ P PA +KP+ ++ PS P +RVL+ SS ++ ++ +E+ PFST
Sbjct: 397 TTPRNKPAKPAKKPVVARTDHGCPS-PSAKRVLVSSSFVHLDGKSLSTIEVHFLPFST 453
>SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 229 WRTKSRLQLVPVPLPHCQSSFPPT--TPASVQRKPLSSKLFPS 351
+RT+SR+ L LP+ + PP+ TP + PLS PS
Sbjct: 68 YRTRSRILLPITDLPYLGLNEPPSIATPCLIPNYPLSRLFSPS 110
>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
Length = 543
Score = 27.9 bits (59), Expect = 5.3
Identities = 20/50 (40%), Positives = 23/50 (46%)
Frame = -3
Query: 433 SEAPTLSPGFKMCTSLMISIVPFEILVGMERAWKKEVFSGPRPVLWAGMT 284
S P L P S I+P EILVG+ER +K V G L MT
Sbjct: 258 SNGPPLEPKVWDLESAEWPIIPGEILVGLER--RKPVLKGLLITLCENMT 305
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 27.9 bits (59), Expect = 5.3
Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Frame = +1
Query: 7 SWVPITWARNRCSRSVSRYVAPVSCSWEKTL*C-AKPSKTTWTTIQPSRNCCHTSRATLA 183
S VP+T + + + P + + + T KP + + CC+ +A A
Sbjct: 580 SSVPLTQFQAQLQQQQPAQATPTNAATQDTDSAPCKPICLKFCVTLCPQKCCNKGKAAAA 639
Query: 184 SCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFP----PTTPA 309
+ +P + + T T++ + P P C P P+ PA
Sbjct: 640 AAAPTKPPTAAPTTAAATQAAPAAMTCPQPACAPQSPMSCMPSCPA 685
>SB_11480| Best HMM Match : LCCL (HMM E-Value=7.5)
Length = 152
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 45 QIRISLRGSSIVLMGKNTMMRKAIKDHLDNNP 140
Q+R L S +L+G NT+++ A+ D L P
Sbjct: 23 QVRPGLTALSTILLGANTVIQAALPDILAKTP 54
>SB_57025| Best HMM Match : Fascin (HMM E-Value=0)
Length = 504
Score = 27.5 bits (58), Expect = 6.9
Identities = 24/95 (25%), Positives = 40/95 (42%)
Frame = +1
Query: 148 RNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKP 327
R CCH ++ S AET+ ++ T L+L+P P P ++ P
Sbjct: 148 RQCCHQQADKISRDSEAETATKTET----PPPWLRLLPAPYPRTPTTTCALVPVGTINIT 203
Query: 328 LSSKLFPSLPKFQRVLLKSSTMYTS*SPVTRLELL 432
+S SL + ++ L + S +P +R LL
Sbjct: 204 VSENNARSLRRKRKSLFCIVRVSKS-NPFSRSSLL 237
>SB_26098| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.6)
Length = 342
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 121 TTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTN 225
TTWT ++ S R LA CS TS R+ TN
Sbjct: 67 TTWTALRGSTTSYRRRRTFLAPCS-INTSQRTSTN 100
>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.1 bits (57), Expect = 9.2
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = -3
Query: 346 ERAWKKEVFSGPRPVLWAGMTTDNGAMAPGRA-GAWTLFSNSLSRTSTRSPRVNTKPTLP 170
E AWK+EV +G +G G APG+ W + ++ T + S +N PT+
Sbjct: 717 ETAWKREVVNGGMVTSPSGGRGTLGLEAPGQVYSQWKVITDG---TMSPSDILNYAPTVT 773
Query: 169 L 167
L
Sbjct: 774 L 774
>SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7)
Length = 682
Score = 27.1 bits (57), Expect = 9.2
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = +1
Query: 160 HTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQ--RKPLS 333
++S SC ETSL S + L+ +P P P +S P TPAS R P+
Sbjct: 95 NSSSEICPSCRALETSLSSCLATLLVRP-LETIPAPAPTTPTS--PATPASGPPIRTPIP 151
Query: 334 SKLFPS 351
K P+
Sbjct: 152 LKETPT 157
>SB_28863| Best HMM Match : EzrA (HMM E-Value=1.1)
Length = 939
Score = 27.1 bits (57), Expect = 9.2
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -3
Query: 514 IVPESYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSL--MISIVPFEILVGMER 341
+VP+SY TRP NG+ + + A E P+L+ F+ L +I + I +
Sbjct: 167 LVPDSYFDAFTRPIINGK---VEEKTAGEGPSLATMFEDDRHLQGVIQSIRDAISNAFDM 223
Query: 340 AWK 332
AWK
Sbjct: 224 AWK 226
>SB_11301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 27.1 bits (57), Expect = 9.2
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 8/72 (11%)
Frame = +1
Query: 115 SKTTWTTIQPSRNCCHTSRATLASC---SPAETSLRSVTNCWRTKSR----LQLVPVPL- 270
++++ T +R+ CHT +T +SC P + L T C S LQ V V
Sbjct: 132 ARSSCHTTHSARSSCHTKHSTRSSCHTTQPCKKQLSHNTPCTEKLSHNTLPLQRVAVTQH 191
Query: 271 PHCQSSFPPTTP 306
H +SS T P
Sbjct: 192 NHAKSSCDTTEP 203
>SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)
Length = 156
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 211 RSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRK 324
+ + + +RT S+++LVPV +P+C S T V RK
Sbjct: 25 QEICDQYRT-SKMKLVPVVMPNCGHSCCSTCAKRVNRK 61
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 27.1 bits (57), Expect = 9.2
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Frame = -3
Query: 496 TCLTTRPYENGEMFNMLRRVASEAPTLSP---GFKMCTSLMISIVPFEILVGMERAWKKE 326
T T+ PY + AS +PT+SP C+++ P +G ERA ++
Sbjct: 1220 TSATSPPYTSASPVPTTTPSASSSPTISPIGSSLAQCSTVDSMDKPSLRPIGTERACRRA 1279
Query: 325 VFS------GPRPVLWAGMTTDNGAMAP 260
S G P++ G NG P
Sbjct: 1280 TASPLPSMPGISPLIGGGKLVGNGDSVP 1307
>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
Length = 1197
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 431 RSSNLVTGLQDVYIVDDFNSTL 366
R NLVT L DVYI ++ S L
Sbjct: 295 RDKNLVTNLSDVYIGSNYRSIL 316
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,831,641
Number of Sequences: 59808
Number of extensions: 450364
Number of successful extensions: 1494
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1488
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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