Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30527
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   257   3e-69
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    54   5e-08
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    31   0.37 
Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AF000195-2|AAC24267.1|  316|Caenorhabditis elegans Hypothetical ...    28   3.4  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   3.4  
AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical ...    28   3.4  
AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z81522-2|CAB04238.1|  415|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical pr...    27   6.0  
L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorte...    27   6.0  
AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  257 bits (630), Expect = 3e-69
 Identities = 118/170 (69%), Positives = 145/170 (85%)
 Frame = +3

Query: 6   IVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGF 185
           +VG DNVGS+QMQ+IR ++RG + +LMGKNTM+RKA++ HL  NP+LEKLLPHI  NVGF
Sbjct: 29  LVGVDNVGSKQMQEIRQAMRGHAEILMGKNTMIRKALRGHLGKNPSLEKLLPHIVENVGF 88

Query: 186 VFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKIS 365
           VFT+ DL E+R KLLEN+  APA+ GAIAP  V +P  NTG+GPEKTSFFQAL IPTKI+
Sbjct: 89  VFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIA 148

Query: 366 KGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 515
           +GTIEI+NDVH++K GDKVGASE+ LLNML ++PFSYGLVV+QVYD GT+
Sbjct: 149 RGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTL 198


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 54.4 bits (125), Expect = 5e-08
 Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 3/166 (1%)
 Frame = +3

Query: 3   FIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA--LEKLLPHIKGN 176
           FI    N+ S +   IR   + +S    GKN ++  A+     +  A  L K    +KG 
Sbjct: 41  FIFTIANMRSTRFIAIRQKYKENSRFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQ 100

Query: 177 VGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP-AHNTGLGPEKTSFFQALSIP 353
            G +FT     EV  +  E   +  AR G +A  +VV+P    +          + L +P
Sbjct: 101 CGLMFTNMSKKEVEAEFSEASEEDYARVGDVATETVVLPEGPISQFAFSMEPQLRKLGLP 160

Query: 354 TKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVK 491
           TK+ KG I +     + K G+ +   +A +L    +    + L+ K
Sbjct: 161 TKLDKGVITLYQQFEVCKEGEPLTVEQAKILKHFEVKMSQFRLIFK 206


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
 Frame = +1

Query: 79  CSWEKTL*CAKP-SKTTWTTIQPSRNCCHTSRATLASCSPAET-SLRSVTNCWRTKSRLQ 252
           CSW        P S+T +   QP+ N     R     C+P     ++S    W T S+  
Sbjct: 273 CSWMIDPLATDPQSRTHYLQCQPAPNNLFCGRWQRMPCAPGTVFDVQSQVCVWDTNSQPG 332

Query: 253 LVPVPLPHCQSSFP 294
            +P P P+  +  P
Sbjct: 333 TLPTPAPYVSTQAP 346


>Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical
           protein T06E6.10 protein.
          Length = 249

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/56 (23%), Positives = 21/56 (37%)
 Frame = +1

Query: 70  PVSCSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRT 237
           P  C+  +   C      T   ++P+  C H +  T   CSP +        C+ T
Sbjct: 109 PAGCAMVRPSGCMDSPTMTGCELKPT--CIHVNACTTTKCSPGKKCALHTVQCFTT 162


>AF000195-2|AAC24267.1|  316|Caenorhabditis elegans Hypothetical
           protein C32F10.4 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 262 VPLPHCQSSFPPTTPASVQRKPLSSKLFPSLP-KFQRVLLKSSTMYTS 402
           VP P   S  PP    +    P+SS+  P +P K Q V  +SST   S
Sbjct: 207 VPTPMSPSGMPPPPRYTAYAPPMSSQTAPPIPTKQQPVDSESSTTSAS 254


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 286 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 176
           TT      P  AG WT+ +N ++R  TR P    +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227


>AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical
           protein Y41G9A.6 protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +1

Query: 175 TLASCSPAETSLRSVTNCWRTKSRLQL-VPVPL-PHCQSSFPPTTPASVQRKPLSSKLFP 348
           T+ S  P      ++     T+S + L + VP  P   + FPP TP   +  P ++ L  
Sbjct: 451 TVVSSEPNHIDFSAINQLSHTQSPVNLQIRVPQQPLGAAGFPPVTPGLFENNPQNTDLAD 510

Query: 349 SLPKFQRV 372
            L  F ++
Sbjct: 511 LLQNFLKL 518


>AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical
           protein Y67D8B.2 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 225 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 374
           +L   +Q  A   A+  L+  +P   TGL P +   FQAL  P  I+  T
Sbjct: 42  VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89


>Z81522-2|CAB04238.1|  415|Caenorhabditis elegans Hypothetical
           protein F32B4.1 protein.
          Length = 415

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 236 VLQQFVTDLNEVSAGEHEANVALDVWQQFLEGWIVVQVVFDGFAHHSVFS 87
           +L     DL E S   HE+   LDVW++ L      Q +  G++ H + S
Sbjct: 239 LLSSSARDLRE-SREPHESGWNLDVWKRNLNECRKGQYLLHGYSGHGILS 287


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +1

Query: 139 QPSRNCCHTSRATLASCSPAETSLRSVTNCWR--TKSRLQLVPVPLPHCQSSFPPTTPAS 312
           Q  +N C ++ +     S  + S ++ ++C+   T + +Q  P  +P C+ S    TPA+
Sbjct: 90  QSCQNQCQSAPSVSQCQSTCQQSCQT-SSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAA 148

Query: 313 VQRKP 327
           VQ  P
Sbjct: 149 VQCVP 153


>Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical
           protein R07E5.6 protein.
          Length = 443

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 247 LQLVPVPLPHCQSSFPPTTPASVQRKPL 330
           L  +  P P    S PPT P S  RKP+
Sbjct: 377 LSTLATPSPVPSPSVPPTAPPSTPRKPM 404


>L12018-10|AAA65466.2|  683|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 19 protein.
          Length = 683

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +1

Query: 328 LSSKLFPSLPKFQRVLLKSSTMYTS*SPVTRLELLKPPFSTC*TSLHSHMVLLLSRYMIL 507
           L+S   P+L  +Q       T   S      L+L+  PFST  T +HSH++  L  +++L
Sbjct: 251 LTSMAVPALLFWQFTQFAFFTQICSIFLAFSLDLI--PFSTAKTVIHSHIISFLIGFLLL 308


>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = +1

Query: 109 KPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSS 288
           K S  T   +    N C T + +  +C      + +    W +++  Q  P PLP C+S+
Sbjct: 586 KSSHCTGNPVSIDCNGCPTPKRSGINCDNRMAEVNNQAGRWSSEATSQ--PAPLP-CKSA 642

Query: 289 FPPTTPASVQRKPLS 333
             PT  +S    P S
Sbjct: 643 -NPTEDSSQDAPPTS 656


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,602,192
Number of Sequences: 27780
Number of extensions: 316619
Number of successful extensions: 1206
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)