Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30527
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 213 8e-56
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 213 8e-56
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 211 2e-55
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 42 2e-04
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa... 32 0.20
At3g09000.1 68416.m01053 proline-rich family protein 32 0.20
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 30 1.1
At3g50610.1 68416.m05534 hypothetical protein 29 1.4
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 1.4
At1g33410.1 68414.m04136 expressed protein 29 1.4
At5g04470.1 68418.m00445 expressed protein 29 1.9
At1g58220.1 68414.m06612 myb family transcription factor contain... 29 1.9
At5g13260.1 68418.m01523 expressed protein 28 3.2
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 4.3
At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family... 28 4.3
At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family... 28 4.3
At3g56700.1 68416.m06307 male sterility protein, putative simila... 27 5.7
At5g13510.1 68418.m01560 ribosomal protein L10 family protein ri... 27 7.5
At4g31770.1 68417.m04508 calcineurin-like phosphoesterase family... 27 7.5
At2g29000.1 68415.m03527 leucine-rich repeat family protein / pr... 27 7.5
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein... 27 7.5
At5g59650.1 68418.m07479 leucine-rich repeat protein kinase, put... 27 9.9
At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2) ide... 27 9.9
At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2) ide... 27 9.9
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa... 27 9.9
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 213 bits (519), Expect = 8e-56
Identities = 101/172 (58%), Positives = 133/172 (77%), Gaps = 2/172 (1%)
Frame = +3
Query: 6 IVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIKGNV 179
+V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H +N N A+ LLP ++GNV
Sbjct: 29 VVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQGNV 88
Query: 180 GFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTK 359
G +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTK
Sbjct: 89 GLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTK 148
Query: 360 ISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 515
I+KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++
Sbjct: 149 INKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSV 200
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 213 bits (519), Expect = 8e-56
Identities = 101/172 (58%), Positives = 133/172 (77%), Gaps = 2/172 (1%)
Frame = +3
Query: 6 IVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIKGNV 179
+V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H +N N A+ LLP ++GNV
Sbjct: 29 VVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQGNV 88
Query: 180 GFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTK 359
G +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTK
Sbjct: 89 GLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTK 148
Query: 360 ISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 515
I+KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++
Sbjct: 149 INKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSV 200
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 211 bits (516), Expect = 2e-55
Identities = 101/172 (58%), Positives = 131/172 (76%), Gaps = 2/172 (1%)
Frame = +3
Query: 6 IVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPALEKLLPHIKGNV 179
+V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H D N A LLP ++GNV
Sbjct: 30 VVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNV 89
Query: 180 GFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTK 359
G +FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTK
Sbjct: 90 GLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTK 149
Query: 360 ISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTI 515
I+KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++
Sbjct: 150 INKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSV 201
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 42.3 bits (95), Expect = 2e-04
Identities = 31/163 (19%), Positives = 74/163 (45%), Gaps = 3/163 (1%)
Frame = +3
Query: 3 FIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNN--PALEKLLPHIKGN 176
++ +N+ + + ++ R R + +G N +M+ A+ ++ + K+ ++G+
Sbjct: 41 YVFSFENMRNIKFKEFRQQFRHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGD 100
Query: 177 VGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG-LGPEKTSFFQALSIP 353
G + T EV + +R G+IA +V + E + L +P
Sbjct: 101 TGLLVTDMPKEEVESLFNAYEDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEMP 160
Query: 354 TKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGL 482
+++KGT+E++ D + + G ++ A +L +L + ++ L
Sbjct: 161 VRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKL 203
>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
family protein predicted proteins, Arabidopsis thaliana
; contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 411
Score = 32.3 bits (70), Expect = 0.20
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Frame = +1
Query: 130 TTIQPSRNCC---HTSRATLASCSPAETSLRSVTNCWRTK-SRLQL-VPVPLPHCQSSFP 294
++IQP RN +S + +S S ++ +SV + R++ S QL V + +P P
Sbjct: 5 SSIQPPRNFVLAKDSSTGSSSSSSSSQVKEQSVEDVSRSQPSGSQLDVSIQIP------P 58
Query: 295 PTTPASVQRKPLSSKLFPSLPKFQ-RVLLKSSTMYTS*SPVTRLELLKPPFSTC 453
TP+ + LS K SLP ++ R+LL S TS P+ + P + C
Sbjct: 59 KPTPSLGILRNLSLKRKASLPNYERRLLLSPSVSETSEKPLVASPITSPYWKRC 112
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 32.3 bits (70), Expect = 0.20
Identities = 42/137 (30%), Positives = 57/137 (41%), Gaps = 4/137 (2%)
Frame = +1
Query: 43 SRSVSRYVAPVSCSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVT 222
SRS SR P S T ++P T + SR+ TSRATL + ++ T
Sbjct: 153 SRSTSRPATPTRRSTTPTTSTSRPVTTRASN---SRSSTPTSRATLTAARATTSTAAPRT 209
Query: 223 NCWRTKSRLQLVPV---PLPHCQSSFPPTT-PASVQRKPLSSKLFPSLPKFQRVLLKSST 390
+ S P P P SS P + PA+ R+P S+ PS+ V K+ +
Sbjct: 210 TTTSSGSARSATPTRSNPRPSSASSKKPVSRPATPTRRP-STPTGPSI-----VSSKAPS 263
Query: 391 MYTS*SPVTRLELLKPP 441
TS SP L K P
Sbjct: 264 RGTSPSPTVN-SLSKAP 279
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/61 (34%), Positives = 24/61 (39%)
Frame = +1
Query: 259 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLKSSTMYTS*SPVTRLELLKP 438
P PL SS PP P+S LS L PS P S++ S P L P
Sbjct: 58 PPPLSLSPSSPPPPPPSSSPLSSLSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSP 117
Query: 439 P 441
P
Sbjct: 118 P 118
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +3
Query: 120 DHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLENKVQAPARPGAIAPLSVVIPA 296
D + +P + H KGNV + D KLL+ VQ + G+ + P
Sbjct: 31 DFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPG 90
Query: 297 HNTGLGPEK 323
H+ G+G +K
Sbjct: 91 HSPGVGHKK 99
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 132 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 230
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At1g33410.1 68414.m04136 expressed protein
Length = 1459
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 31 RNRCSRSVSRYVAPVSCSW--EKTL*CAKPSKTTWTTIQPSRNCC 159
RN S +V R + V S EKT C++ + W +Q R CC
Sbjct: 823 RNGQSDAVERILVVVEASLRGEKTFGCSQDTSGDWCLLQHLRGCC 867
>At5g04470.1 68418.m00445 expressed protein
Length = 127
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 265 PLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLK 381
P P Q PP+TP+S+ + KL SL K++ ++ K
Sbjct: 51 PPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYEIIVNK 89
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 29.1 bits (62), Expect = 1.9
Identities = 31/113 (27%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Frame = -3
Query: 445 RRVASEAPTLSPGFKMCTSLMISIVPFEILVGMERAWKKEVFSGPRPVLWAGMTTDNGAM 266
RR + + G + + M + + VG R K++ G P+L +G T GA
Sbjct: 244 RRTDTSNTSTQTGLQRTEAQMAANRALSLAVG-NRLPSKKLAVGMTPMLSSG--TIKGAQ 300
Query: 265 APGRAGAWTLFSN--------SLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLL 131
A G + TL +LSR +T P ++ + GNS SRA L+
Sbjct: 301 ANGASSGSTLQGQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSRADLM 353
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.3 bits (60), Expect = 3.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 81 ARYWSHVARYGSAASVASPRYRH 13
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -3
Query: 283 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 170
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 392 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 285
IVD N N R K++ E GFL+ GV GG +
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEE 137
>At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 392 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 285
IVD N N R K++ E GFL+ GV GG +
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEE 137
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 27.5 bits (58), Expect = 5.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 142 PSRNCCHTSRATLASCSPAETSLRSVTN 225
P R HT+R SC ETS +VT+
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTS 60
>At5g13510.1 68418.m01560 ribosomal protein L10 family protein
ribosomal protein L10- Nicotiana tabacum, EMBL:AB010879
Length = 220
Score = 27.1 bits (57), Expect = 7.5
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +3
Query: 33 QQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGD 203
+Q Q +R +L ++ +++ KNT++ KAI+ E L P +KG ++F + D
Sbjct: 76 KQFQDLRRTLPDTTKLIVAKNTLVFKAIE-----GTKWEALKPCMKGMNAWLFVQTD 127
>At4g31770.1 68417.m04508 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 418
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 194 GEHEANVALDVWQQFLEGWIVVQVVFDGFA 105
G HEA+ L W+ + GW + F GFA
Sbjct: 83 GNHEASNYL--WELYYGGWAATNIYFLGFA 110
>At2g29000.1 68415.m03527 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 872
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 126 LDNNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLLENK 239
+ N P ++++ PHI VG + T+GD+ + D L +
Sbjct: 761 ITNQPVIQQVREKPHIAEWVGLMLTKGDIKSIMDPKLNGE 800
>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
protein-related similar to ATP-dependent Clp protease,
ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
putida KT2440]; similar to ClpB protein
(SP:Q9RA63){Thermus thermophilus}
Length = 422
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = -2
Query: 299 VGGNDD*QWGNGTGTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQ 153
+G + + +G+ T + +LQ + +S+GE E +D W Q
Sbjct: 329 IGSHFERCFGSETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQ 377
>At5g59650.1 68418.m07479 leucine-rich repeat protein kinase,
putative contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 892
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 126 LDNNPALE--KLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQA 248
+ N P ++ + HI VGF TRGD+ ++ D L ++
Sbjct: 783 ITNQPVIDQSRSKSHISQWVGFELTRGDITKIMDPNLNGDYES 825
>At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 810
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 231 ENKVQAPARPGAIAPLSVVIPAHNTGLGPE 320
EN + P +P IAP + V + T + PE
Sbjct: 620 ENAAETPVKPSVIAPETPVRTSEQTVIAPE 649
>At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2)
identical to cohesion family protein SYN2 [Arabidopsis
thaliana] GI:12006360; supporting cDNA
gi|12006359|gb|AF281154.1|AF281154
Length = 809
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 231 ENKVQAPARPGAIAPLSVVIPAHNTGLGPE 320
EN + P +P IAP + V + T + PE
Sbjct: 620 ENAAETPVKPSVIAPETPVRTSEQTVIAPE 649
>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
squalene epoxidase, putative similar to SP|O65404 (SE
1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
Length = 585
Score = 26.6 bits (56), Expect = 9.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 349 SLPKFQRVLLKSSTMYTS*SPVTRLELLKPPFST 450
+LP+FQ L +SS +YT+ P +R L F+T
Sbjct: 8 NLPRFQSTL-RSSLLYTNHRPSSRFSLSTRRFTT 40
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,113,581
Number of Sequences: 28952
Number of extensions: 304938
Number of successful extensions: 1038
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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