Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30526
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    31   0.040
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.28 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   0.65 
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   1.1  
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    25   4.6  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    24   6.1  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    24   8.0  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    24   8.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    24   8.0  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    24   8.0  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    24   8.0  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    24   8.0  

>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 31.5 bits (68), Expect = 0.040
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = +3

Query: 93  LEEQLYNSVVVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 260
           L E   +  V  D +S  E  K KH  + + +KS + ++   K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169

Query: 261 LQGSKD 278
            +  K+
Sbjct: 170 SKYIKE 175


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 28.7 bits (61), Expect = 0.28
 Identities = 25/95 (26%), Positives = 44/95 (46%)
 Frame = +1

Query: 70  IPTSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM**TN*YETTR*TAWSTP 249
           +P + T    S++TI+SS P+T+  +   +  T      +S    +    TT  T  ST 
Sbjct: 502 VPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTT-STS 560

Query: 250 INFGSRAPRTSSVIVXQLSSDLSSPKTRXSLCTSA 354
           + + S  P TSS      S+ ++S     + CT++
Sbjct: 561 VPYTS-TPVTSSNYTISSSTPVTSTPVTTTNCTTS 594


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 0.65
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 102 QLYNSVVVADYDSAVEKSKHLYEEKKS 182
           QL N     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 174 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 266
           K+   +T+  NKL+ ++  +  +YAY L LQ
Sbjct: 35  KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 24.6 bits (51), Expect = 4.6
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +3

Query: 93  LEEQLYNSVVVADYDSAVEKSKHLYEE-KKSEVITNVVNKLIRNNKMN 233
           LE  L +  +VA   S++EKSK LY+   K ++  +VV    R ++MN
Sbjct: 279 LEYMLEHGGLVALEASSIEKSKLLYDTLDKHDLYISVVEPAAR-SRMN 325


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 72  SDVPNDILEEQLYNSVVVADYDSAVEKSKHLY 167
           S +P  I E Q  +     +     EKSKHLY
Sbjct: 129 SHIPGMITENQTNDDAKEVNGSDVDEKSKHLY 160


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 93   LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNN 224
            LEE   +  V+   + A+  SK +  ++  E+I +  NK I +N
Sbjct: 1623 LEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAIDSN 1666


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 168  EEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKDIVRDCXPV 302
            E ++  VI +  + L+++  MNC +YA Q W      + RDC  +
Sbjct: 1111 EMERDAVIGHGTSFLMQDRLMNCSDYA-QSW------VCRDCGSI 1148


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +1

Query: 70  IPTSLTTFWRSSFTIASSLPITTVRLKRA-SIYTRRRRAKSSQM**TN*YETTR*TAWST 246
           +PTS  TF  S F   S LP ++     + S         SS    T+   T+   + ST
Sbjct: 677 VPTS--TFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTS---SVST 731

Query: 247 PINFGSRAPRTSSVIVXQLSSDLSS 321
           P++  S  P + S    +LSS L+S
Sbjct: 732 PLSNSSAYPSSGSSTFSRLSSTLTS 756


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 70  IPTSLTTFWRSSFTIASSLPIT-TVRLKRASIYTRRRRAKSSQ 195
           +P +   F   S + ASSLPIT +  L   ++++  + ++SSQ
Sbjct: 463 VPLTSNNFSSISHSSASSLPITPSSYLSNTTLHSSVQSSQSSQ 505


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 141 AVEKSKHLYEEKKSEVITNVVNKL-IRNN 224
           A+E+ +  Y  ++ E +TN++N++  RNN
Sbjct: 845 ALEQIRVHYLIRRCEALTNIINRISFRNN 873


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 353  ALVHKLNRVFGEDKSELNWXTITDDVLGAL 264
            +L HK+N+V      +L+  +I DDVL A+
Sbjct: 1050 SLRHKMNKVMLSVLEQLDVASIQDDVLIAI 1079


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,258,408
Number of Sequences: 5004
Number of extensions: 20728
Number of successful extensions: 94
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)