Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30526
         (356 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.84 
SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_35038| Best HMM Match : Ras (HMM E-Value=6.8e-13)                   27   3.4  
SB_5215| Best HMM Match : DUF745 (HMM E-Value=1.6)                     27   3.4  
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_51696| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024)                 27   5.9  
SB_35002| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.8  
SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.8  
SB_24253| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.8  
SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)                 26   7.8  
SB_19731| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.8  

>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 29.5 bits (63), Expect = 0.84
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +1

Query: 67  QIPTSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM 198
           +IPTS     R SFTI   +P + VR  R S +T  RR  +S++
Sbjct: 403 RIPTSRVRQTRLSFTIVRRIPTSRVRQTRLS-FTMIRRIPASRV 445



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +1

Query: 67  QIPTSLTTFWRSSFTIASSLPITTVRLKRASIYTRRRRAKSSQM 198
           +IPTS     R SFT+   +P + VR  R S +T  RR  +S++
Sbjct: 146 RIPTSRVRQTRLSFTMVRRIPTSRVRQTRLS-FTMVRRIPTSRV 188


>SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 20/88 (22%), Positives = 41/88 (46%)
 Frame = +3

Query: 93   LEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGS 272
            L   L N +  A   +A  +   L++E K ++++NVV + +    +   + A++ W Q  
Sbjct: 810  LNRLLRNEISNAQGPNAAGQKNFLFQEVK-DILSNVVQRNMVRESLQAKKDAFESWRQVI 868

Query: 273  KDIVRDCXPVEFRLIFAENAIXLMYKRD 356
            +  +  C P +  L   + A+ L   +D
Sbjct: 869  EVALATC-PGDILLQDVKQAVILETLQD 895


>SB_35038| Best HMM Match : Ras (HMM E-Value=6.8e-13)
          Length = 322

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
 Frame = +3

Query: 174 KKSEVITNVVNKLIRNNKMNCME------YAYQLWLQGSKDIVRD 290
           KK +   ++V  L + NK N +E         Q  LQGSKDIVR+
Sbjct: 207 KKKKAAISLVESLFQENKPNPIEEECENFLKEQSGLQGSKDIVRN 251


>SB_5215| Best HMM Match : DUF745 (HMM E-Value=1.6)
          Length = 171

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +3

Query: 99  EQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGSKD 278
           ++L  S + A  D A+EK KHL +    +++T    ++I+  ++  +E    +  Q SKD
Sbjct: 65  KELATSAISAAKDLAIEKGKHLIDRTSVKMLTPKNVEVIK--QITGLEPNTPVITQKSKD 122

Query: 279 IV 284
           I+
Sbjct: 123 IL 124


>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 353 ALVHKLNRVFGEDKSELNWXTITDDVLGALEPKLIGVLHAVHL 225
           ++V +  +  G D SE  +   T +VL ALE + + + H VH+
Sbjct: 94  SVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDIAHGVHV 136


>SB_51696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 129 DYDSAVEKSKHLYEEKKSE 185
           DYD ++EK  HL+++K+ +
Sbjct: 189 DYDRSLEKDAHLHDDKRDD 207


>SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024)
          Length = 414

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 39  CLFVASLYA-ADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSE 185
           CL  ++ Y   DS VP +  +    +   V  YD+  + ++ +Y +KK E
Sbjct: 175 CLTHSACYLKGDSPVPENTNDAYTNSRYAVRQYDALQQLTRIIYTDKKKE 224


>SB_35002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 907

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 21/104 (20%), Positives = 41/104 (39%)
 Frame = +3

Query: 24  AIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVV 203
           +++I C F      A S V      E +Y     A   S   K+K     ++   +  + 
Sbjct: 672 SLMIACKFAFPFIVA-SHVTRSF--ENMYKRFNHAQMTSQRVKNKKFAMRRRRTTVKMLQ 728

Query: 204 NKLIRNNKMNCMEYAYQLWLQGSKDIVRDCXPVEFRLIFAENAI 335
           +   R   +   +Y + +  Q + D +    P E R+ F+E ++
Sbjct: 729 SSFWRARMLTPSDYKFLIEHQWNGDAITYTSPAEVRMAFSEGSV 772


>SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 207 KLIRNNKMNCMEYAYQLWLQGSKDIVRDC 293
           +L  NN+M    +A+  WL+G +   R C
Sbjct: 17  RLHNNNRMLICTFAHSTWLKGRQGSSRQC 45


>SB_24253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 42  LFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSK 158
           L  +  Y  D D+ +DI++EQ Y      D   AV++ K
Sbjct: 81  LIESEYYNMDKDLQSDIMDEQEYFEKKAEDVGVAVDELK 119


>SB_20665| Best HMM Match : 7tm_3 (HMM E-Value=1.8e-10)
          Length = 1514

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 231  NCMEYAYQLWLQGSKDIVRDCXPVEFRLIFAENAIXLMY 347
            + +E+AY L+L G++   R+C   +   I+  NAI  ++
Sbjct: 1125 SAVEHAYDLFLNGARPRCRECVD-DSPCIYTSNAIARIF 1162


>SB_19731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +3

Query: 90  ILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNC 236
           +++ +    VV A Y + V +++ LY  +   ++ +V+ K+  NN+M C
Sbjct: 231 VIQARYVRIVVQAWYTNIVMRAE-LYGCEGKRLVEHVIRKVTGNNQMQC 278


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,574,210
Number of Sequences: 59808
Number of extensions: 165282
Number of successful extensions: 572
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)