Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30526
         (356 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    24   1.5  
AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.     24   2.0  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   3.4  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    23   4.5  
U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    22   6.0  

>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
 Frame = +3

Query: 126 ADYDSAVEKSKHLYEEKKS-----EVITNVVNKLIRNNKMNCMEYAYQLWLQGSK 275
           AD+        H+Y E+K      ++  N + K  R+N +  M+Y  + + +  K
Sbjct: 677 ADFCDVWINIAHIYVEQKQYISAIQMYENCLKKFYRHNNVEVMQYLARAYFRAGK 731


>AF295693-1|AAL55241.1|  786|Anopheles gambiae polyprotein protein.
          Length = 786

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +3

Query: 84  NDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLWL 263
           +D  +EQ Y    + D  +   + +   +E K E  TNV +  I  ++    + +   W 
Sbjct: 565 DDESKEQTYGDPKIEDNPTESVEIEWSLDETKREAKTNVADDTISESEFYGWDCSDDGWP 624

Query: 264 QG 269
           QG
Sbjct: 625 QG 626


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +2

Query: 176 EERSHHKCSEQTDT----KQQDELHGVRLSTLA 262
           EE+ H +C++Q++T    KQ ++      S LA
Sbjct: 484 EEKHHERCAKQSETTRIEKQLEQFESAPRSKLA 516


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 303 QLXNNHGRCPWSP 265
           +L   HG CPW P
Sbjct: 247 RLTGVHGGCPWRP 259


>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = +1

Query: 232 TAWSTPINFGSRAPRTSSVIVXQLSSDLSSPK-TRXSLC 345
           T WS   N   R PRT         S  SSP+  + S C
Sbjct: 24  TVWSMASNRTVRCPRTRRSEAVMTRSTPSSPRLAQASTC 62


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 308,145
Number of Sequences: 2352
Number of extensions: 5077
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 26224815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)