Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30526
         (356 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   0.41 
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   0.41 
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    28   2.2  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    28   2.2  
L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna polym...    28   2.2  
U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    27   3.9  
AC084197-11|AAM44397.1|  305|Caenorhabditis elegans Homologous t...    27   5.1  
AC084197-10|AAY43984.1|  308|Caenorhabditis elegans Homologous t...    27   5.1  
U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical pr...    26   6.7  
Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical pr...    26   8.9  

>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 129 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 239
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 129 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 239
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +3

Query: 9    PXMKPAIVILCLFVASLYAADSD-VPNDILEEQLY--NSVVVADYDSAVEKSKH-LYEEK 176
            P +K  +V LC+   +LY + S     + + EQLY  +SV  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 177  KSEVITNVVNKLIRNNKMNCMEYAY 251
            + E   N++N  +      C+E AY
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAY 1004


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +3

Query: 9    PXMKPAIVILCLFVASLYAADSD-VPNDILEEQLY--NSVVVADYDSAVEKSKH-LYEEK 176
            P +K  +V LC+   +LY + S     + + EQLY  +SV  A    + ++ +  + EE 
Sbjct: 922  PTVKNVVVDLCMTAQTLYISPSTRETREKILEQLYEWHSVCTAQMRISGKRFQMVMNEEI 981

Query: 177  KSEVITNVVNKLIRNNKMNCMEYAY 251
            + E   N++N  +      C+E AY
Sbjct: 982  EPETYHNILN--VMPEGQACLEKAY 1004


>L12018-1|AAA65458.1|  518|Caenorhabditis elegans Polk (dna
           polymerase kappa) homologprotein 1 protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +3

Query: 126 ADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNN--KMNCMEYAYQLWLQGSKDIVRDCXP 299
           A Y S  +K +   EEK  E I N +    R    K   +    ++ L+ S+D+ RDC  
Sbjct: 29  ASYSSFSKKQQSRIEEKVLE-IKNRLQTATREERQKSEILMENLEMKLESSRDLSRDCVC 87

Query: 300 VEFRLIFA 323
           ++    FA
Sbjct: 88  IDMDAYFA 95


>U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical
           protein C03F11.3 protein.
          Length = 563

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 229 ILLFRISLFTTFVMTSLFFSSYK 161
           I LF +S FTT  +  L FS YK
Sbjct: 206 ISLFNVSPFTTVTVDQLLFSGYK 228


>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
           protein H20J04.2 protein.
          Length = 1427

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 36  LCLFVASLYAADSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSE 185
           LC F +       DV     EE+L +   VAD+   V++ K   +E+  E
Sbjct: 382 LCFFFSEARRLGIDVGGLEQEEKLLSGKAVADFKQRVKEEKDAEKERAKE 431


>AC084197-11|AAM44397.1|  305|Caenorhabditis elegans Homologous to
           drosophila sqd (squid)protein protein 1, isoform a
           protein.
          Length = 305

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
 Frame = +2

Query: 158 AFIRGEEERSHHKCSEQT----DTKQQDELHGVRLSTLAPGLQGHRP 286
           AFI  EEE S  K S QT     T++ D    V      PG QG  P
Sbjct: 154 AFIVFEEEESADKASSQTKQTFGTRECDVKKAVPQGKRFPGAQGRMP 200


>AC084197-10|AAY43984.1|  308|Caenorhabditis elegans Homologous to
           drosophila sqd (squid)protein protein 1, isoform b
           protein.
          Length = 308

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
 Frame = +2

Query: 158 AFIRGEEERSHHKCSEQT----DTKQQDELHGVRLSTLAPGLQGHRP 286
           AFI  EEE S  K S QT     T++ D    V      PG QG  P
Sbjct: 154 AFIVFEEEESADKASSQTKQTFGTRECDVKKAVPQGKRFPGAQGRMP 200


>U21317-6|AAA62527.1|  313|Caenorhabditis elegans Hypothetical
           protein B0495.8a protein.
          Length = 313

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 69  DSDVPNDILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVN 206
           DS + N +   +++     ADY+ A ++  H Y+    E+I + V+
Sbjct: 49  DSRLQNVVSCRKVHEPAHKADYERAQKEKDHFYDVDAFEIIEHAVH 94


>Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical
           protein C03C10.4 protein.
          Length = 244

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = +3

Query: 87  DILEEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCMEYAYQ 254
           D+L+ ++     + +  SA++KS+  YE K  EV+T  +N  +    M+ +E+  Q
Sbjct: 152 DLLQLEMALRKCLEENGSAIKKSRPYYERK--EVLTRTMNSQL--ELMSILEHEVQ 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,991,671
Number of Sequences: 27780
Number of extensions: 118129
Number of successful extensions: 528
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)