Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30526
         (356 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   3.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   3.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   5.8  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           20   7.6  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 78  VPNDILEEQLYNSVVVADYDSAVEK 152
           VP+++  + LYN +VV++  S   K
Sbjct: 566 VPDEVPSDVLYNRLVVSEDGSETFK 590


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 78  VPNDILEEQLYNSVVVADYDSAVEK 152
           VP+++  + LYN +VV++  S   K
Sbjct: 566 VPDEVPSDVLYNRLVVSEDGSETFK 590


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +3

Query: 96  EEQLYNSVVVADYDSAVEKSKHLYEEKKSEVITNVVN 206
           +EQL  S V ++Y    +   +   E ++  +TN+++
Sbjct: 475 QEQLTLSKVTSNYHEEFQSLNNAVGEMEATNVTNILS 511


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -1

Query: 113 IVKLLLQNVVRD 78
           ++K+ L+NV+RD
Sbjct: 58  VLKVFLENVIRD 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,813
Number of Sequences: 438
Number of extensions: 1352
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)